Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H3L95_RS11825 Genome accession   NZ_CP059566
Coordinates   2482799..2486005 (+) Length   1068 a.a.
NCBI ID   WP_003761941.1    Uniprot ID   C6MAC3
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2477799..2491005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS11810 (H3L95_11810) comE 2480014..2480313 (+) 300 WP_040668782.1 helix-hairpin-helix domain-containing protein Machinery gene
  H3L95_RS11815 (H3L95_11815) - 2480896..2481643 (-) 748 Protein_2300 transposase -
  H3L95_RS11820 (H3L95_11820) hslO 2481780..2482685 (-) 906 WP_003761944.1 Hsp33 family molecular chaperone HslO -
  H3L95_RS11825 (H3L95_11825) recC 2482799..2486005 (+) 3207 WP_003761941.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L95_RS11830 (H3L95_11830) - 2486072..2486440 (+) 369 WP_259345820.1 hypothetical protein -
  H3L95_RS11835 (H3L95_11835) pdxA 2486523..2487521 (-) 999 WP_003761937.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  H3L95_RS11840 (H3L95_11840) - 2487619..2489400 (-) 1782 WP_003761935.1 J domain-containing protein -
  H3L95_RS13920 - 2489757..2489888 (+) 132 WP_259345821.1 hypothetical protein -
  H3L95_RS11845 (H3L95_11845) - 2489906..2490199 (-) 294 WP_003761930.1 hypothetical protein -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 121268.28 Da        Isoelectric Point: 4.7833

>NTDB_id=470751 H3L95_RS11825 WP_003761941.1 2482799..2486005(+) (recC) [Neisseria sicca strain DSM 17713]
MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANLQFSLPAGLTWQLMQKLIPDI
PALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLLG
LGEDEVWQAQLWRYLDDGNQSAPHRVALWEKLLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQ
YWGNVIEAAQLLKGGDEADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQNDIQNLRMPSEHSR
ADLLGDGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKL
SRRQSLLYALEQTLDLLESRFEVDKVLPLLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGAADNLFTWQQAL
ERIVLGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPASAEEWTERCRDLVQSLFLPDADDQYA
LQQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT
KAAVFDLIAKHPQKGDRARRDDDRYLFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAAMTGRRSKGLAEH
WVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEENTPVPTVWQDDFIRFWKNPVKAWLQQTL
GWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQDFQETAVRLDAESLLPAGELGKLWQQNFQAAAKRIDGALLQSP
KLPPFAYEVPFDGQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCAVGSSETETRQTHIVQPEETTLYPEIPS
SQAQEMLQKWLAFFNLGQTRPLPFFAKTSLAAAEAYGKKQSWEDTLNKARESYHGNKVSKGQKDYTEVALVFGNEDTEPV
EGALFQRLVEELLIPLLDAVKEESSDAA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=470751 H3L95_RS11825 WP_003761941.1 2482799..2486005(+) (recC) [Neisseria sicca strain DSM 17713]
ATGTTCTACCTCTACCAATCCAACCGCCTCGAATCGCTAGCCGCCCTGTTTGCCGGAATCCAAAGGGTCAGGCCGCTTGA
GTCTGCTTTGGCGGCGGAACAGATTGTGGTGCAGAGTCAGGGGATGCGGCGTTATTTGAGCGTGTATCTGGCGCGCGAAC
TGGGGGTGGCGGCGAATTTGCAATTCAGCCTGCCGGCGGGTTTGACGTGGCAGTTGATGCAGAAGCTGATTCCCGATATT
CCCGCGCTCAGTCCGTTTTCGCCGGAGGTAATGCGCTGGCGGCTGTTGGATTTGTTCCGCAGCGAGCGTTTTCAGACGAC
CTCTGAATTTGAAAACGTCCGCTCCATTTTGCAAAGCTATTTGGGCAGCGGCGAATCGGCGGATTATCAGTTGGCGGGGC
AGTTGGCGGATATTTTCGACCAGTATCTGGTGTACCGTCCGCAGTGGATTGATGCCTGGCAGGAAGGCAAACTTCTGGGA
CTGGGCGAGGACGAGGTCTGGCAGGCGCAGCTTTGGCGGTATTTGGACGACGGCAACCAATCCGCGCCGCACCGTGTGGC
GTTGTGGGAAAAGCTGCTGTCGTCTTTGGATAAGGCGCACCTGCCCGAGCGTTTTTTCGTGTTCGGCATTTCGACGATGG
CGCCGATGTATTTGCAGCTTTTGCAGAAAATTTCGGAACATTGCGATGTGTTTGTGTTCGCGCTCAATCCGAGCGGCCAG
TATTGGGGCAATGTGATTGAGGCGGCGCAGCTTTTGAAGGGCGGCGACGAGGCGGATTTGTCGCAGACGGGGCATCCGCT
GTTGGCATCGCTGGGCAAGCAGGGGCGTGATTTTTTTGATTTTCTGACAGAAATCGGCTTGGAGGAGCAGCCTGTGTTTG
AAGAAGTTTCAGACGACACGCTGCTGCACTGCCTGCAAAACGACATTCAAAACCTGCGGATGCCGTCTGAACACAGCCGC
GCGGATTTGCTGGGCGACGGATCCATACGTATCGTTTCGGCACACAGCCCCTTGCGAGAATTGCAAATTTTGAAAGACAA
GCTGTTGCGGATTCTACACGAACATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAGCCGTACA
GCCCGTTTATTGAAGCGGTATTCGGGCAGGCGCAGGGTGGGGCGCAGGCTTTGCCGTATTCGGTGTCGGACGTGAAACTC
AGCCGCCGCCAGTCGCTGCTTTACGCGCTGGAGCAGACGCTGGATTTGCTGGAAAGCCGGTTTGAAGTCGATAAAGTGCT
GCCGCTGTTGGAAAGCGGTTTGGTGCTGCGCCGTTTTGGGCTGACGGCGGACGATTTGCCGCTGCTGCACGACACCGTTG
CCGAATTGAACGTGCATTGGGGGTTGGACGGAACAATGCGCGGCGCGGCGGACAATCTGTTCACCTGGCAGCAGGCGTTG
GAACGCATCGTATTGGGTTGGATGTTGCCCGACGACGGCAGCCCGCTCTGGCAAAACGTCAGCGCGTGGCACGGCGATGT
CAACCGCCTCGATGTGTTCGGCCGCTTTGCAGCTTTCATCCGCACACTGTCGCGTCTTGCCGCCGAGTGGCGCAAACCCG
CATCGGCGGAAGAATGGACGGAACGCTGCCGCGATTTGGTGCAGTCATTATTCCTGCCCGACGCCGACGACCAATACGCC
TTGCAGCAGTTCGAGCAGGCGTTGGCAAAATGGCAGGAAGAAACCGCGTTGGCAGGCTTTAGCGGCACTTTGCCGCAACA
TACGGTCATCCGCCACATCCGCCGCTTCTTAGGCAGCGAAAGCCAAGCCGGATTTTTGCGCGGCGGCATCACCTTTTGCA
GCATGGTGCCGATGAGGAGCCTGCCGTTTAAAGTTATCTGCCTGTTGGGGCTGAACGACGGCGATTTCCCGCGTAACACT
AAAGCCGCCGTGTTCGACCTGATTGCCAAACACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTT
CCTCGAAGCCATCATCAGCGCGCGCGACATCCTTTATCTCTCCTACGTCGGCCGCAGCATTCGCAACGACGACGAACTCG
CCCCGTCCGCCCTCGTCAGCGAACTCATCGACACCATCGCCGCCATGACCGGACGGCGCAGCAAAGGGCTGGCGGAACAC
TGGGTCGAACAACATCCTCTGCAACCGTTCTCCCACCGCTATTTCATCGCAGACAACATTTCAGACGACCTCTTCAGCAC
GCGGCAGGACTACGCCGAAGCCCTCAACCGCCCGCGCGAACAGGCGCGTCCGTTTTTCAGCGAAGCCCTCGAAGAAAACA
CCCCCGTCCCGACCGTCTGGCAGGACGACTTCATCCGCTTCTGGAAAAATCCCGTCAAAGCATGGCTGCAACAAACCTTG
GGCTGGCGTGAACCCTACCGCGACGAAGCATGGGAATCCGCCGAACCCTTCGAGCCGCAACGCGCCGACAAAATCGCCGC
CGCCTATCTCGACGCCCGCCGCCACAACCAAGACTTTCAAGAAACCGCCGTCCGCCTCGACGCCGAAAGCCTGTTGCCCG
CCGGTGAATTGGGTAAATTGTGGCAGCAGAATTTCCAAGCCGCAGCCAAACGCATAGACGGCGCATTGCTGCAAAGCCCC
AAACTGCCGCCTTTCGCTTACGAAGTTCCGTTCGACGGGCAAACCCTGCAAGGCAGCCTCGGCAACCTTTACCAATGCGG
CCAAGTGTTCTACCTCGATCGCAAACCCAACGCCCCGCAACGCATCGCCCTCCTGCTCGAACATTTAATCTTTTGCGCAG
TAGGGTCGTCTGAAACCGAAACCCGCCAAACCCATATCGTTCAGCCTGAAGAAACAACGCTTTATCCCGAAATCCCCAGC
AGCCAAGCGCAAGAAATGCTGCAAAAATGGCTGGCGTTTTTCAACCTCGGACAAACTCGCCCGCTGCCTTTCTTCGCCAA
AACCAGCCTCGCCGCCGCCGAAGCCTACGGCAAAAAACAGAGCTGGGAAGATACCCTGAACAAAGCCAGGGAAAGCTATC
ACGGCAACAAAGTCAGCAAAGGGCAAAAAGACTATACCGAAGTCGCCTTAGTGTTCGGCAACGAAGACACCGAACCGGTA
GAAGGAGCGTTGTTCCAAAGATTGGTGGAAGAGCTGCTGATACCGCTGCTGGACGCGGTAAAGGAAGAATCGTCGGATGC
GGCATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(780-995)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6MAC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

72.778

100

0.728