Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   H3L95_RS11735 Genome accession   NZ_CP059566
Coordinates   2461829..2462527 (+) Length   232 a.a.
NCBI ID   WP_003760389.1    Uniprot ID   A0A9X5NXG2
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2460325..2461332 2461829..2462527 flank 497


Gene organization within MGE regions


Location: 2460325..2462527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS11730 (H3L95_11730) - 2460325..2461332 (+) 1008 WP_003760393.1 IS5 family transposase -
  H3L95_RS11735 (H3L95_11735) dsbA1 2461829..2462527 (+) 699 WP_003760389.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25386.08 Da        Isoelectric Point: 6.0254

>NTDB_id=470749 H3L95_RS11735 WP_003760389.1 2461829..2462527(+) (dsbA1) [Neisseria sicca strain DSM 17713]
MKLKTLTLAAALLALTACDNKVQTSVPADSAPAASAASAAPVALVEGLNYTTLSTPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHVKTFKDDTYLRTEHVVWGDEMKPLARLAAAVDMAVADTKDIANSHIFDAMVNQKVKLQDPETLKKWLNEQTA
FDGKKVLAAYESPESQTRADKMAELTNTYKIDGTPTVIVGGKYKVEFADWESGMKTIDLLADRVREEQKTAK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=470749 H3L95_RS11735 WP_003760389.1 2461829..2462527(+) (dsbA1) [Neisseria sicca strain DSM 17713]
ATGAAACTGAAAACCCTTACCCTCGCTGCTGCTCTGCTGGCCCTGACCGCCTGCGACAACAAAGTCCAAACCAGCGTTCC
TGCCGACAGTGCGCCTGCGGCTTCAGCAGCCTCCGCTGCGCCTGTCGCTTTGGTTGAAGGGCTTAACTACACCACTCTCA
GCACGCCTATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTCGAATTTTTCGGCTACTTCTGTCCGCACTGCGCCCAC
CTCGAGCCCGTTTTGAGCAAACACGTCAAAACCTTCAAAGACGACACCTACCTTCGTACTGAACACGTTGTTTGGGGCGA
TGAGATGAAGCCGTTGGCGCGCCTTGCTGCCGCCGTCGATATGGCGGTCGCAGACACCAAAGACATTGCAAACAGCCATA
TCTTTGATGCTATGGTTAATCAGAAAGTCAAACTGCAAGACCCTGAAACCCTCAAAAAATGGTTGAACGAGCAAACCGCT
TTTGACGGCAAAAAAGTCCTCGCTGCCTATGAATCTCCCGAAAGCCAAACCCGCGCAGACAAAATGGCAGAGTTGACCAA
TACCTACAAAATCGACGGCACGCCTACCGTCATTGTCGGCGGTAAATACAAAGTCGAATTTGCCGACTGGGAATCAGGTA
TGAAAACCATAGACCTGCTTGCAGACAGAGTACGCGAAGAACAGAAAACTGCCAAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

82.403

100

0.828
  dsbA2 Neisseria meningitidis MC58

76.415

91.379

0.698