Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H3L95_RS01975 Genome accession   NZ_CP059566
Coordinates   394282..395088 (-) Length   268 a.a.
NCBI ID   WP_003755523.1    Uniprot ID   A0A0C1GLM1
Organism   Neisseria sicca strain DSM 17713     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 389282..400088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS01955 (H3L95_01955) - 389806..392325 (+) 2520 WP_003755537.1 TonB-dependent siderophore receptor -
  H3L95_RS01960 (H3L95_01960) - 392561..392995 (+) 435 WP_003755533.1 YqjD family protein -
  H3L95_RS01965 (H3L95_01965) - 393137..393535 (+) 399 WP_003755531.1 phage holin family protein -
  H3L95_RS01970 (H3L95_01970) - 393528..393797 (+) 270 WP_003755528.1 hypothetical protein -
  H3L95_RS01975 (H3L95_01975) comL 394282..395088 (-) 807 WP_003755523.1 outer membrane protein assembly factor BamD Machinery gene
  H3L95_RS01980 (H3L95_01980) rluD 395087..396211 (+) 1125 WP_003755525.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3L95_RS01985 (H3L95_01985) - 396213..396794 (+) 582 WP_040667880.1 hypothetical protein -
  H3L95_RS01990 (H3L95_01990) - 396868..397206 (+) 339 WP_003755519.1 hypothetical protein -
  H3L95_RS01995 (H3L95_01995) - 397337..397627 (+) 291 WP_003755517.1 hypothetical protein -
  H3L95_RS02000 (H3L95_02000) pgeF 397681..398451 (+) 771 WP_003755515.1 peptidoglycan editing factor PgeF -
  H3L95_RS02005 (H3L95_02005) - 398749..399375 (+) 627 WP_040667879.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31211.21 Da        Isoelectric Point: 7.9863

>NTDB_id=470720 H3L95_RS01975 WP_003755523.1 394282..395088(-) (comL) [Neisseria sicca strain DSM 17713]
MKKILLVVSLSLALGACASNKGTVDKDAQITQDWNVEKLYAEAHDELNSSNYTRAIKLYEILESRFPNGRYAQQAQLDTA
YAYYKDDEPEKALAAIDRFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRSAYQAFAELVQRYPE
SKYAADATERMAKLVDALGGNEISVARYYMKRGAYLAAVNRAQKIVERYQNTRYVEESLAMMELAYKKLDKPQLAADTRR
VLETNFPQSPFLQHQWQPNDMPWWRYWR

Nucleotide


Download         Length: 807 bp        

>NTDB_id=470720 H3L95_RS01975 WP_003755523.1 394282..395088(-) (comL) [Neisseria sicca strain DSM 17713]
ATGAAAAAAATTCTTTTAGTAGTTTCGTTAAGTCTGGCACTGGGTGCCTGTGCAAGCAATAAAGGTACGGTCGATAAAGA
CGCGCAAATCACACAAGATTGGAACGTGGAAAAACTCTATGCCGAAGCGCATGACGAGTTGAACAGCAGCAATTATACGC
GAGCCATCAAGTTATACGAAATTTTAGAATCCCGCTTCCCCAACGGCCGCTACGCGCAACAGGCGCAGCTGGACACCGCA
TACGCCTATTACAAAGACGACGAGCCTGAAAAAGCCCTCGCCGCCATCGACCGCTTCCAGCGCCATCACCCGCAACATCC
GAATATGGATTACGCGCTTTACCTCAAAGGCTTGGTTCTGTTCAACGAAGACCAATCCTTCCTCAACAAACTCGCCTCGC
AAGACTGGTCCGACCGCGACCCTAAAGCCAACCGCAGCGCATACCAAGCGTTTGCCGAATTGGTACAACGCTATCCGGAG
AGCAAATACGCCGCCGACGCAACCGAGCGCATGGCAAAACTGGTGGACGCTTTGGGCGGTAACGAAATCTCCGTTGCCCG
CTACTACATGAAACGCGGCGCCTACCTCGCCGCAGTCAACCGCGCCCAAAAAATCGTCGAGCGTTACCAAAATACCCGCT
ACGTCGAAGAATCGCTCGCTATGATGGAGCTGGCTTACAAAAAACTGGACAAACCCCAACTCGCCGCCGACACCCGCCGC
GTCTTGGAAACCAACTTCCCGCAAAGCCCGTTCCTGCAACACCAATGGCAGCCGAACGATATGCCTTGGTGGCGCTACTG
GCGTTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1GLM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

85.393

99.627

0.851
  comL Neisseria meningitidis MC58

85.393

99.627

0.851