Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H3L96_RS08115 Genome accession   NZ_CP059565
Coordinates   1715391..1716194 (-) Length   267 a.a.
NCBI ID   WP_009116408.1    Uniprot ID   G4CQA7
Organism   Neisseria wadsworthii strain DSM 22245     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710391..1721194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS08115 (H3L96_08105) comL 1715391..1716194 (-) 804 WP_009116408.1 outer membrane protein assembly factor BamD Machinery gene
  H3L96_RS08120 (H3L96_08110) rluD 1716193..1717314 (+) 1122 WP_009116409.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H3L96_RS08125 (H3L96_08115) - 1717369..1717839 (-) 471 WP_050795382.1 serine acetyltransferase -
  H3L96_RS08130 (H3L96_08120) pgeF 1717977..1718756 (+) 780 WP_009116411.1 peptidoglycan editing factor PgeF -
  H3L96_RS08135 (H3L96_08125) dnaB 1718910..1720319 (+) 1410 WP_009116412.1 replicative DNA helicase -
  H3L96_RS08140 (H3L96_08130) - 1720478..1721161 (+) 684 WP_009116413.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31115.22 Da        Isoelectric Point: 7.8789

>NTDB_id=470707 H3L96_RS08115 WP_009116408.1 1715391..1716194(-) (comL) [Neisseria wadsworthii strain DSM 22245]
MKKILLIVSLGLALSGCATKGAVDKDAQITQDWTVNQLYTEAQDELNSNNYTRAIKLYELLQSRFPNGVYAQQAQLDTAY
AYYKDDEPERALAAIQRFQRLYPNHPRMDYVLYLKGLVLFNEDKSFLNKLASQDWSDRDPKANREAYYAFEELTKRYPDS
EYVADATERMARLVDALAGNEMAIARYYINRGAYLAAINRSQKIIAQYQNTRFVEEALAIMITSYKKLNKPDLAEDTTRV
LQTNFPQSPYLTQDWKPNSMPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=470707 H3L96_RS08115 WP_009116408.1 1715391..1716194(-) (comL) [Neisseria wadsworthii strain DSM 22245]
ATGAAAAAAATTCTTTTAATTGTTTCTTTAGGCTTGGCGTTATCAGGCTGCGCCACCAAAGGCGCCGTAGACAAAGATGC
CCAGATTACCCAAGATTGGACCGTTAACCAGCTCTACACCGAAGCGCAAGACGAGCTAAACAGCAATAATTATACGCGAG
CCATCAAATTATATGAACTGCTGCAATCACGATTTCCCAATGGCGTGTACGCCCAGCAAGCTCAGTTGGATACGGCTTAT
GCCTATTACAAAGATGACGAACCCGAACGAGCGCTCGCAGCCATACAGCGTTTCCAGCGCCTTTATCCGAACCATCCACG
CATGGATTATGTTCTTTACTTGAAAGGTTTGGTGCTGTTTAACGAAGATAAATCTTTCTTAAACAAACTGGCCTCTCAAG
ATTGGTCCGACCGCGATCCAAAAGCCAACCGTGAAGCCTATTACGCTTTCGAAGAGCTTACCAAACGCTATCCCGATAGC
GAATATGTAGCCGATGCCACTGAACGCATGGCTAGATTGGTTGATGCTTTAGCCGGTAATGAAATGGCGATTGCTCGTTA
CTATATTAACCGTGGCGCATATCTTGCTGCCATCAACCGTTCGCAAAAAATCATTGCCCAATATCAAAATACCCGCTTTG
TAGAAGAAGCTTTGGCCATTATGATCACTTCTTATAAGAAGCTGAATAAACCCGATTTGGCCGAAGATACCACCCGCGTG
CTGCAAACCAACTTCCCGCAAAGCCCTTATCTAACGCAAGACTGGAAGCCCAACAGCATGCCGTGGTGGCGCTACTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CQA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

74.436

99.625

0.742
  comL Neisseria gonorrhoeae MS11

73.684

99.625

0.734