Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H2788_RS10510 Genome accession   NZ_CP059550
Coordinates   2231314..2231694 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226314..2236694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS10480 (H2788_10415) tadA 2226321..2226821 (-) 501 WP_198071116.1 tRNA adenosine(34) deaminase TadA -
  H2788_RS10485 (H2788_10420) - 2226829..2227953 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  H2788_RS10490 (H2788_10425) ung 2227950..2228663 (-) 714 WP_347016109.1 uracil-DNA glycosylase -
  H2788_RS10495 (H2788_10430) - 2228714..2229310 (-) 597 WP_347016110.1 6-carboxytetrahydropterin synthase -
  H2788_RS10500 (H2788_10435) gspK 2229540..2230499 (-) 960 WP_347016111.1 type II secretion system minor pseudopilin GspK -
  H2788_RS10505 (H2788_10440) xcpW 2230499..2231314 (-) 816 WP_347016112.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H2788_RS10510 (H2788_10445) xcpV 2231314..2231694 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  H2788_RS10515 (H2788_10450) - 2231684..2232235 (-) 552 WP_347016113.1 type II secretion system protein -
  H2788_RS10520 (H2788_10455) - 2232245..2232853 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H2788_RS10525 (H2788_10460) - 2232891..2233664 (-) 774 WP_347016114.1 TatD family hydrolase -
  H2788_RS10530 (H2788_10465) - 2233682..2234023 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H2788_RS10535 (H2788_10470) - 2234036..2235016 (-) 981 WP_347016115.1 DNA polymerase III subunit delta' -
  H2788_RS10540 (H2788_10475) kdsB 2235028..2235789 (-) 762 WP_191106485.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=470537 H2788_RS10510 WP_019458993.1 2231314..2231694(-) (xcpV) [Acinetobacter seifertii strain E-022166]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=470537 H2788_RS10510 WP_019458993.1 2231314..2231694(-) (xcpV) [Acinetobacter seifertii strain E-022166]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCCTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96