Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPPN120_RS06955 Genome accession   NC_017378
Coordinates   1450345..1450920 (-) Length   191 a.a.
NCBI ID   WP_001203635.1    Uniprot ID   -
Organism   Helicobacter pylori Puno120     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1445345..1455920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS06945 - 1447076..1448279 (-) 1204 Protein_1345 restriction endonuclease subunit S -
  HPPN120_RS06950 (HPPN120_07205) - 1448276..1450312 (-) 2037 WP_001045351.1 N-6 DNA methylase -
  HPPN120_RS06955 (HPPN120_07210) comFC 1450345..1450920 (-) 576 WP_001203635.1 ComF family protein Machinery gene
  HPPN120_RS06960 (HPPN120_07215) tmk 1450908..1451483 (-) 576 WP_000289744.1 dTMP kinase -
  HPPN120_RS06965 (HPPN120_07220) coaD 1451485..1451958 (-) 474 WP_001169255.1 pantetheine-phosphate adenylyltransferase -
  HPPN120_RS06970 (HPPN120_07225) - 1451958..1452521 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HPPN120_RS06975 (HPPN120_07235) flgA 1452531..1453187 (-) 657 WP_000697666.1 flagellar basal body P-ring formation chaperone FlgA -
  HPPN120_RS06980 (HPPN120_07240) uvrD 1453184..1455229 (-) 2046 WP_000345179.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21470.08 Da        Isoelectric Point: 9.0945

>NTDB_id=47053 HPPN120_RS06955 WP_001203635.1 1450345..1450920(-) (comFC) [Helicobacter pylori Puno120]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTIKYAGKSLEFRANHPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=47053 HPPN120_RS06955 WP_001203635.1 1450345..1450920(-) (comFC) [Helicobacter pylori Puno120]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAAGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCCACGAATACTATCAAATATGCCGGGAAAAGCCTGG
AATTTCGCGCTAACCACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.979

100

0.372

Multiple sequence alignment