Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H2788_RS02165 Genome accession   NZ_CP059550
Coordinates   457566..458201 (-) Length   211 a.a.
NCBI ID   WP_151792563.1    Uniprot ID   A0A7H2UIQ4
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452566..463201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS02130 (H2788_02130) mlaE 452894..453670 (+) 777 WP_004705340.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H2788_RS02135 (H2788_02135) - 453670..454353 (+) 684 WP_019457797.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H2788_RS02140 (H2788_02140) - 454380..455021 (+) 642 WP_347016931.1 ABC transporter substrate-binding protein -
  H2788_RS02145 (H2788_02145) - 455033..455320 (+) 288 WP_086496846.1 STAS domain-containing protein -
  H2788_RS02150 (H2788_02150) - 455395..456408 (-) 1014 WP_004705344.1 magnesium and cobalt transport protein CorA -
  H2788_RS02155 (H2788_02155) - 456566..457147 (+) 582 WP_004705346.1 TIGR00730 family Rossman fold protein -
  H2788_RS02160 (H2788_02160) - 457162..457560 (+) 399 WP_100193358.1 NUDIX domain-containing protein -
  H2788_RS02165 (H2788_02165) comF 457566..458201 (-) 636 WP_151792563.1 ComF family protein Machinery gene
  H2788_RS02170 (H2788_02170) recG 458194..460239 (-) 2046 WP_039253566.1 ATP-dependent DNA helicase RecG -
  H2788_RS02175 (H2788_02175) - 460260..461087 (+) 828 WP_004705354.1 NAD(P)H-binding protein -
  H2788_RS02180 (H2788_02180) - 461155..462141 (+) 987 WP_216985835.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24465.79 Da        Isoelectric Point: 9.9683

>NTDB_id=470528 H2788_RS02165 WP_151792563.1 457566..458201(-) (comF) [Acinetobacter seifertii strain E-022166]
MFKLFNPQYLFQLLSPCLLCEIGTRGKHSLCKECWEQLPWLKQAVQRNDLSVLVACHYAYPINHIIQQFKYEQKLHYQIL
LAEILQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLRIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAI
TQEKRRYRRVLIIDDVITTGSSISALSLVLKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=470528 H2788_RS02165 WP_151792563.1 457566..458201(-) (comF) [Acinetobacter seifertii strain E-022166]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGGTAA
GCACTCGCTTTGTAAAGAATGTTGGGAACAACTACCATGGCTTAAGCAGGCAGTTCAGCGTAATGATCTATCTGTTCTTG
TGGCCTGTCATTATGCCTATCCAATTAACCACATAATTCAGCAGTTTAAATATGAACAGAAATTACATTACCAAATCCTA
CTTGCTGAAATTTTACAGCAATTAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGTTTAAC
GGAACGTGGTTTTAATCAATCATTATTACTTGCCAAGCTTCTAAGTAAACAATTAAGAATACCCGTTTGGCAGCCTGTCC
AACGCCTCAATGAGCGCTCTCAAAAAGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATA
ACTCAAGAAAAACGGCGCTACCGTCGTGTGCTGATTATTGATGATGTGATCACAACAGGAAGTTCAATTTCCGCTTTAAG
TCTGGTGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGCTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2UIQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

91.469

100

0.915
  comF Acinetobacter baumannii D1279779

90.521

100

0.905