Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H2789_RS10305 Genome accession   NZ_CP059549
Coordinates   2180798..2181178 (-) Length   126 a.a.
NCBI ID   WP_347018383.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2175798..2186178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS10275 (H2789_10270) tadA 2175919..2176422 (-) 504 WP_347018380.1 tRNA adenosine(34) deaminase TadA -
  H2789_RS10280 (H2789_10275) - 2176428..2177552 (-) 1125 WP_003651483.1 enoyl-CoA hydratase/isomerase family protein -
  H2789_RS10285 (H2789_10280) ung 2177549..2178262 (-) 714 WP_005041081.1 uracil-DNA glycosylase -
  H2789_RS10290 (H2789_10285) - 2178312..2178908 (-) 597 WP_003651480.1 6-carboxytetrahydropterin synthase -
  H2789_RS10295 (H2789_10290) gspK 2179138..2180097 (-) 960 WP_347018381.1 type II secretion system minor pseudopilin GspK -
  H2789_RS10300 (H2789_10295) xcpW 2180097..2180798 (-) 702 WP_347018382.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H2789_RS10305 (H2789_10300) xcpV 2180798..2181178 (-) 381 WP_347018383.1 type II secretion system minor pseudopilin GspI Machinery gene
  H2789_RS10310 (H2789_10305) - 2181168..2181722 (-) 555 WP_347018384.1 type II secretion system protein -
  H2789_RS10315 (H2789_10310) - 2181732..2182340 (-) 609 WP_347020219.1 TetR/AcrR family transcriptional regulator -
  H2789_RS10320 (H2789_10315) - 2182377..2183150 (-) 774 WP_003651468.1 TatD family hydrolase -
  H2789_RS10325 (H2789_10320) - 2183168..2183509 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  H2789_RS10330 (H2789_10325) - 2183520..2184500 (-) 981 WP_347018385.1 DNA polymerase III subunit delta' -
  H2789_RS10335 (H2789_10330) kdsB 2184514..2185275 (-) 762 WP_347018386.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13966.13 Da        Isoelectric Point: 9.4463

>NTDB_id=470497 H2789_RS10305 WP_347018383.1 2180798..2181178(-) (xcpV) [Acinetobacter calcoaceticus strain NCIMB13260]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQITSQGETWQI
DKSAESTISSNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=470497 H2789_RS10305 WP_347018383.1 2180798..2181178(-) (xcpV) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCTGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACTTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTAG
CCTTAATGGAGATAAATCAAGAATGGCTTCAAGGCACTCAAAGTAAGCAGATTACTTCTCAAGGGGAAACTTGGCAGATT
GATAAATCAGCAGAATCCACAATCAGCTCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAAGG
AAAAGTTCAAAATGGTATTACCCATTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

92.857

100

0.929