Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H2789_RS01970 Genome accession   NZ_CP059549
Coordinates   413692..414321 (-) Length   209 a.a.
NCBI ID   WP_347020192.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408692..419321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS01935 (H2789_01935) mlaE 409022..409798 (+) 777 WP_045433193.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H2789_RS01940 (H2789_01940) - 409798..410481 (+) 684 WP_005038457.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H2789_RS01945 (H2789_01945) - 410508..411149 (+) 642 WP_005038459.1 ABC transporter substrate-binding protein -
  H2789_RS01950 (H2789_01950) - 411161..411448 (+) 288 WP_017390219.1 STAS domain-containing protein -
  H2789_RS01955 (H2789_01955) - 411521..412534 (-) 1014 WP_004639553.1 magnesium and cobalt transport protein CorA -
  H2789_RS01960 (H2789_01960) - 412693..413274 (+) 582 WP_005038465.1 TIGR00730 family Rossman fold protein -
  H2789_RS01965 (H2789_01965) - 413288..413686 (+) 399 WP_005038468.1 NUDIX domain-containing protein -
  H2789_RS01970 (H2789_01970) comF 413692..414321 (-) 630 WP_347020192.1 phosphoribosyltransferase family protein Machinery gene
  H2789_RS01975 (H2789_01975) recG 414314..416359 (-) 2046 WP_056482605.1 ATP-dependent DNA helicase RecG -
  H2789_RS01980 (H2789_01980) - 416380..417195 (+) 816 WP_347019449.1 SDR family NAD(P)-dependent oxidoreductase -
  H2789_RS01985 (H2789_01985) - 417275..418258 (+) 984 WP_080547735.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24214.33 Da        Isoelectric Point: 9.2515

>NTDB_id=470488 H2789_RS01970 WP_347020192.1 413692..414321(-) (comF) [Acinetobacter calcoaceticus strain NCIMB13260]
MFSFLNPQHLIHSLSPCLLCESGVREKHSLCKDCWEQLPWLKQIIQRNDQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAF
TQEKRRYRRVLIIDDVVTTGSSIYALSQVLKQLGCTTIHAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=470488 H2789_RS01970 WP_347020192.1 413692..414321(-) (comF) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGTTTAGTTTCTTAAATCCACAGCATCTTATCCACTCACTCTCACCTTGCTTGTTGTGTGAGTCAGGTGTGCGAGAAAA
ACATTCGCTCTGTAAGGACTGTTGGGAACAGTTACCATGGCTTAAACAAATAATTCAACGTAATGATCAATCCGTTCTTG
TGGCCTGTGATTATGCATATCCAGTCAATCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGTGAAATTTTACAACAACTCAAATTTCCTAAGGTACAGGCTATTGTACCTATGCCAATTTCGAATCAACGCTTAAT
TGAACGTGGTTTTAATCAGTCACTATTACTCGCGAATATCTTAAGCAAGCAATTAAAAATACCTGTTTGGCAGCCAGTGC
AACGCCTTGCTGAGCATTCACAAAAAGGGCTTTCTCGACTGGAACGCTTTGAGAACATCGAACAACAATTCATTGCATTT
ACTCAAGAAAAACGGCGTTATCGCCGTGTTCTGATTATTGATGATGTCGTTACCACCGGAAGTTCAATTTATGCCCTTAG
TCAGGTATTAAAGCAATTAGGATGTACAACCATTCATGCCGCCTGTTTAGCGGCAACTTTAACGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

85.646

100

0.856
  comF Acinetobacter baumannii D1279779

84.689

100

0.847