Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPPN120_RS01650 Genome accession   NC_017378
Coordinates   337167..337571 (+) Length   134 a.a.
NCBI ID   WP_000599259.1    Uniprot ID   -
Organism   Helicobacter pylori Puno120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332167..342571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS01615 (HPPN120_01670) - 332342..333280 (-) 939 WP_000833954.1 tetraacyldisaccharide 4'-kinase -
  HPPN120_RS01620 (HPPN120_01675) - 333277..334059 (-) 783 WP_001168227.1 NAD+ synthase -
  HPPN120_RS01630 (HPPN120_01680) ilvC 334306..335298 (+) 993 WP_001207781.1 ketol-acid reductoisomerase -
  HPPN120_RS01635 (HPPN120_01685) minD 335322..336128 (+) 807 WP_001019076.1 septum site-determining protein MinD -
  HPPN120_RS01640 (HPPN120_01690) minE 336125..336358 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPPN120_RS01645 (HPPN120_01695) dprA 336370..337170 (+) 801 WP_000841125.1 DNA-processing protein DprA Machinery gene
  HPPN120_RS01650 (HPPN120_01700) dprB 337167..337571 (+) 405 WP_000599259.1 Holliday junction resolvase RuvX Machinery gene
  HPPN120_RS01655 (HPPN120_01710) - 337703..338278 (+) 576 WP_000840154.1 tetratricopeptide repeat protein -
  HPPN120_RS01660 (HPPN120_01715) - 338472..338810 (+) 339 WP_000699916.1 hypothetical protein -
  HPPN120_RS01665 (HPPN120_01720) - 338794..339354 (+) 561 WP_000037129.1 hypothetical protein -
  HPPN120_RS01670 - 339366..339692 (+) 327 WP_041200296.1 glycoside hydrolase family protein -
  HPPN120_RS08530 - 339776..340043 (+) 268 Protein_323 lysozyme -
  HPPN120_RS01680 (HPPN120_01740) - 340353..340734 (+) 382 Protein_324 DUF1294 domain-containing protein -
  HPPN120_RS01685 (HPPN120_01745) - 340734..341519 (+) 786 WP_014536872.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15284.79 Da        Isoelectric Point: 9.1716

>NTDB_id=47046 HPPN120_RS01650 WP_000599259.1 337167..337571(+) (dprB) [Helicobacter pylori Puno120]
MILACDVGLKRIGIAVLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=47046 HPPN120_RS01650 WP_000599259.1 337167..337571(+) (dprB) [Helicobacter pylori Puno120]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCAAAACAGGAATCAGGCCTCTAGGGATTTGAGTGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGAGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAGAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955

Multiple sequence alignment