Detailed information NTG0470382

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H2785_RS17965
• Genome accession: NZ_CP059546
• Coordinates: 3462867..3463727 (+)
• Length: 286 a.a.
• NCBI ID: WP_086442553.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 10_4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3457867..3468727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2785_RS16090 (H2785_16095)	secG	3458472..3458801 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H2785_RS16095 (H2785_16100)	tpiA	3458814..3459608 (-)	795	WP_032060899.1	triose-phosphate isomerase	-
H2785_RS16100 (H2785_16105)	pilB	3459899..3461611 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H2785_RS16105 (H2785_16110)	pilC	3461641..3462867 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H2785_RS17965 (H2785_16115)	pilD	3462867..3463727 (+)	861	WP_086442553.1	prepilin peptidase	Machinery gene
H2785_RS16115 (H2785_16120)	coaE	3463729..3464325 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H2785_RS16120 (H2785_16125)	-	3464322..3465236 (-)	915	WP_000075015.1	DMT family transporter	-
H2785_RS16125 (H2785_16130)	rlmB	3465272..3466021 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H2785_RS16130 (H2785_16135)	-	3466123..3466449 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H2785_RS16135 (H2785_16140)	-	3466526..3467836 (-)	1311	WP_000753282.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=470382 H2785_RS17965 WP_086442553.1 3462867..3463727(+) (pilD) [Acinetobacter baumannii strain 10_4]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=470382 H2785_RS17965 WP_086442553.1 3462867..3463727(+) (pilD) [Acinetobacter baumannii strain 10_4]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAACCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441