Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H2785_RS09690 Genome accession   NZ_CP059546
Coordinates   2097588..2097968 (-) Length   126 a.a.
NCBI ID   WP_223069199.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 10_4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2092588..2102968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2785_RS09660 (H2785_09665) tadA 2092707..2093210 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  H2785_RS09665 (H2785_09670) - 2093217..2094341 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H2785_RS09670 (H2785_09675) ung 2094338..2095051 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  H2785_RS09675 (H2785_09680) - 2095102..2095698 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H2785_RS09680 (H2785_09685) gspK 2095928..2096887 (-) 960 WP_102760271.1 type II secretion system minor pseudopilin GspK -
  H2785_RS09685 (H2785_09690) xcpW 2096887..2097588 (-) 702 WP_223069197.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H2785_RS09690 (H2785_09695) xcpV 2097588..2097968 (-) 381 WP_223069199.1 type II secretion system minor pseudopilin GspI Machinery gene
  H2785_RS09695 (H2785_09700) - 2097958..2098512 (-) 555 WP_000841373.1 type II secretion system protein -
  H2785_RS09700 (H2785_09705) - 2098522..2099130 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H2785_RS09705 (H2785_09710) - 2099168..2099941 (-) 774 WP_000497298.1 TatD family hydrolase -
  H2785_RS09710 (H2785_09715) - 2099959..2100300 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  H2785_RS09715 (H2785_09720) - 2100312..2101292 (-) 981 WP_223069200.1 DNA polymerase III subunit delta' -
  H2785_RS09720 (H2785_09725) kdsB 2101304..2102065 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13987.26 Da        Isoelectric Point: 9.8004

>NTDB_id=470358 H2785_RS09690 WP_223069199.1 2097588..2097968(-) (xcpV) [Acinetobacter baumannii strain 10_4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=470358 H2785_RS09690 WP_223069199.1 2097588..2097968(-) (xcpV) [Acinetobacter baumannii strain 10_4]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992