NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	H2785_RS09685	Genome accession	NZ_CP059546
Coordinates	2096887..2097588 (-)	Length	233 a.a.
NCBI ID	WP_223069197.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain 10_4
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2091887..2102588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2785_RS09655 (H2785_09660)	-	2092194..2092637 (-)	444	WP_069371034.1	SRPBCC family protein	-
H2785_RS09660 (H2785_09665)	tadA	2092707..2093210 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
H2785_RS09665 (H2785_09670)	-	2093217..2094341 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
H2785_RS09670 (H2785_09675)	ung	2094338..2095051 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
H2785_RS09675 (H2785_09680)	-	2095102..2095698 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
H2785_RS09680 (H2785_09685)	gspK	2095928..2096887 (-)	960	WP_102760271.1	type II secretion system minor pseudopilin GspK	-
H2785_RS09685 (H2785_09690)	xcpW	2096887..2097588 (-)	702	WP_223069197.1	type II secretion system minor pseudopilin GspJ	Machinery gene
H2785_RS09690 (H2785_09695)	xcpV	2097588..2097968 (-)	381	WP_223069199.1	type II secretion system minor pseudopilin GspI	Machinery gene
H2785_RS09695 (H2785_09700)	-	2097958..2098512 (-)	555	WP_000841373.1	type II secretion system protein	-
H2785_RS09700 (H2785_09705)	-	2098522..2099130 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
H2785_RS09705 (H2785_09710)	-	2099168..2099941 (-)	774	WP_000497298.1	TatD family hydrolase	-
H2785_RS09710 (H2785_09715)	-	2099959..2100300 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
H2785_RS09715 (H2785_09720)	-	2100312..2101292 (-)	981	WP_223069200.1	DNA polymerase III subunit delta'	-
H2785_RS09720 (H2785_09725)	kdsB	2101304..2102065 (-)	762	WP_000680696.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26643.61 Da Isoelectric Point: 9.5501

                                >NTDB_id=470357 H2785_RS09685 WP_223069197.1 2096887..2097588(-) (xcpW) [Acinetobacter baumannii strain 10_4]

MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFVVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQDGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=470357 H2785_RS09685 WP_223069197.1 2096887..2097588(-) (xcpW) [Acinetobacter baumannii strain 10_4]

ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGTGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGACGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987

Detailed information NTG0470357