NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H2786_RS19795	Genome accession	NZ_CP059542
Coordinates	3603719..3604579 (+)	Length	286 a.a.
NCBI ID	WP_223082342.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain E-011922
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3598719..3609579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2786_RS17115 (H2786_17115)	secG	3599324..3599653 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H2786_RS17120 (H2786_17120)	tpiA	3599666..3600460 (-)	795	WP_000016935.1	triose-phosphate isomerase	-
H2786_RS17125 (H2786_17125)	pilB	3600751..3602463 (+)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H2786_RS17130 (H2786_17130)	pilC	3602493..3603719 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H2786_RS19795 (H2786_17135)	pilD	3603719..3604579 (+)	861	WP_223082342.1	prepilin peptidase	Machinery gene
H2786_RS17140 (H2786_17140)	coaE	3604581..3605177 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H2786_RS17145 (H2786_17145)	-	3605174..3606088 (-)	915	WP_223082343.1	DMT family transporter	-
H2786_RS17150 (H2786_17150)	rlmB	3606124..3606873 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H2786_RS17155 (H2786_17155)	-	3606975..3607301 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H2786_RS17160 (H2786_17160)	-	3607378..3608688 (-)	1311	WP_123793917.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32116.48 Da Isoelectric Point: 6.6676

                                >NTDB_id=470334 H2786_RS19795 WP_223082342.1 3603719..3604579(+) (pilD) [Acinetobacter baumannii strain E-011922]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWEQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=470334 H2786_RS19795 WP_223082342.1 3603719..3604579(+) (pilD) [Acinetobacter baumannii strain E-011922]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGTACGCCAAAAATGATGGAACAAGATTGGGAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAACAACCA

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTATTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.301	100	0.993
pilD	Acinetobacter nosocomialis M2	97.552	100	0.976
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0470334