Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H2786_RS10295 Genome accession   NZ_CP059542
Coordinates   2165443..2165823 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E-011922     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2160443..2170823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS10265 (H2786_10270) tadA 2160562..2161065 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  H2786_RS10270 (H2786_10275) - 2161072..2162196 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H2786_RS10275 (H2786_10280) ung 2162193..2162906 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  H2786_RS10280 (H2786_10285) - 2162957..2163553 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H2786_RS10285 (H2786_10290) gspK 2163783..2164742 (-) 960 WP_031997570.1 type II secretion system minor pseudopilin GspK -
  H2786_RS10290 (H2786_10295) xcpW 2164742..2165443 (-) 702 WP_000594585.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H2786_RS10295 (H2786_10300) xcpV 2165443..2165823 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H2786_RS10300 (H2786_10305) - 2165813..2166367 (-) 555 WP_004841361.1 type II secretion system protein -
  H2786_RS10305 (H2786_10310) - 2166377..2166985 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H2786_RS10310 (H2786_10315) - 2167023..2167796 (-) 774 WP_032058876.1 TatD family hydrolase -
  H2786_RS10315 (H2786_10320) - 2167814..2168155 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  H2786_RS10320 (H2786_10325) - 2168167..2169147 (-) 981 WP_032058875.1 DNA polymerase III subunit delta' -
  H2786_RS10325 (H2786_10330) kdsB 2169159..2169920 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=470311 H2786_RS10295 WP_000836911.1 2165443..2165823(-) (xcpV) [Acinetobacter baumannii strain E-011922]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=470311 H2786_RS10295 WP_000836911.1 2165443..2165823(-) (xcpV) [Acinetobacter baumannii strain E-011922]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1