Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H2786_RS02030 Genome accession   NZ_CP059542
Coordinates   427160..427795 (-) Length   211 a.a.
NCBI ID   WP_032058662.1    Uniprot ID   A0A009PM98
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422160..432795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS01995 (H2786_01995) mlaE 422496..423272 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  H2786_RS02000 (H2786_02000) - 423272..423952 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H2786_RS02005 (H2786_02005) - 423979..424620 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  H2786_RS02010 (H2786_02010) - 424632..424919 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  H2786_RS02015 (H2786_02015) - 424989..426002 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  H2786_RS02020 (H2786_02020) - 426160..426741 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  H2786_RS02025 (H2786_02025) - 426756..427157 (+) 402 WP_000849701.1 NUDIX hydrolase -
  H2786_RS02030 (H2786_02030) comF 427160..427795 (-) 636 WP_032058662.1 ComF family protein Machinery gene
  H2786_RS02035 (H2786_02035) recG 427788..429833 (-) 2046 WP_032058663.1 ATP-dependent DNA helicase RecG -
  H2786_RS02040 (H2786_02040) - 429854..430669 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  H2786_RS02045 (H2786_02045) adeT2 430749..431735 (+) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24593.75 Da        Isoelectric Point: 9.7140

>NTDB_id=470302 H2786_RS02030 WP_032058662.1 427160..427795(-) (comF) [Acinetobacter baumannii strain E-011922]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYVYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=470302 H2786_RS02030 WP_032058662.1 427160..427795(-) (comF) [Acinetobacter baumannii strain E-011922]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGTCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PM98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986