Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H2786_RS01540 Genome accession   NZ_CP059542
Coordinates   322708..323235 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317708..328235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS01525 (H2786_01525) pilM 320261..321319 (+) 1059 WP_223082518.1 pilus assembly protein PilM Machinery gene
  H2786_RS01530 (H2786_01530) pilN 321319..321960 (+) 642 WP_086351977.1 PilN domain-containing protein Machinery gene
  H2786_RS01535 (H2786_01535) pilO 321957..322697 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2786_RS01540 (H2786_01540) pilP 322708..323235 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H2786_RS01545 (H2786_01545) pilQ 323298..325463 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H2786_RS01550 (H2786_01550) aroK 325475..326044 (+) 570 WP_000643712.1 shikimate kinase AroK -
  H2786_RS01555 (H2786_01555) aroB 326073..327155 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  H2786_RS01560 (H2786_01560) - 327171..328046 (+) 876 WP_000218801.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=470293 H2786_RS01540 WP_000695065.1 322708..323235(+) (pilP) [Acinetobacter baumannii strain E-011922]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=470293 H2786_RS01540 WP_000695065.1 322708..323235(+) (pilP) [Acinetobacter baumannii strain E-011922]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714