Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H2786_RS01530 Genome accession   NZ_CP059542
Coordinates   321319..321960 (+) Length   213 a.a.
NCBI ID   WP_086351977.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316319..326960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS01510 (H2786_01510) - 316367..316699 (+) 333 WP_000169602.1 hypothetical protein -
  H2786_RS01515 (H2786_01515) - 316702..317526 (+) 825 WP_086351976.1 putative RNA methyltransferase -
  H2786_RS01520 (H2786_01520) ponA 317544..320099 (-) 2556 WP_223082517.1 penicillin-binding protein PBP1a -
  H2786_RS01525 (H2786_01525) pilM 320261..321319 (+) 1059 WP_223082518.1 pilus assembly protein PilM Machinery gene
  H2786_RS01530 (H2786_01530) pilN 321319..321960 (+) 642 WP_086351977.1 PilN domain-containing protein Machinery gene
  H2786_RS01535 (H2786_01535) pilO 321957..322697 (+) 741 WP_002048088.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2786_RS01540 (H2786_01540) pilP 322708..323235 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H2786_RS01545 (H2786_01545) pilQ 323298..325463 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H2786_RS01550 (H2786_01550) aroK 325475..326044 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24070.46 Da        Isoelectric Point: 5.4244

>NTDB_id=470291 H2786_RS01530 WP_086351977.1 321319..321960(+) (pilN) [Acinetobacter baumannii strain E-011922]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRMEDRYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=470291 H2786_RS01530 WP_086351977.1 321319..321960(+) (pilN) [Acinetobacter baumannii strain E-011922]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGATGGAAGACCGCTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGAGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704