Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSNT_RS00095 | Genome accession | NC_017376 |
| Coordinates | 14025..14288 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori SNT49 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9025..19288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSNT_RS00070 (HPSNT_00045) | groES | 9321..9677 (-) | 357 | WP_000671931.1 | co-chaperone GroES | - |
| HPSNT_RS00075 (HPSNT_00050) | dnaG | 9951..11630 (+) | 1680 | WP_000601578.1 | DNA primase | - |
| HPSNT_RS00080 (HPSNT_00055) | - | 11627..12679 (+) | 1053 | WP_000721183.1 | MnmA/TRMU family protein | - |
| HPSNT_RS00085 (HPSNT_00060) | - | 12771..13598 (+) | 828 | WP_001154897.1 | DUF5718 family protein | - |
| HPSNT_RS00090 (HPSNT_00065) | comB2 | 13744..14025 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSNT_RS00095 (HPSNT_00070) | comB3 | 14025..14288 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| HPSNT_RS00100 (HPSNT_00075) | comB4 | 14290..16653 (+) | 2364 | WP_000890520.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPSNT_RS00105 (HPSNT_00080) | - | 16974..18314 (+) | 1341 | WP_014536644.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=47017 HPSNT_RS00095 WP_000584973.1 14025..14288(+) (comB3) [Helicobacter pylori SNT49]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=47017 HPSNT_RS00095 WP_000584973.1 14025..14288(+) (comB3) [Helicobacter pylori SNT49]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCGGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGTGTGCTGGAATTTTTTGACGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCGGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGTGTGCTGGAATTTTTTGACGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |