Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H2N74_RS17220 Genome accession   NZ_CP059495
Coordinates   3525493..3526182 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JSRB 166     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3520493..3531182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N74_RS17185 (H2N74_17185) - 3520691..3521173 (-) 483 WP_003151394.1 flagellar protein FlgN -
  H2N74_RS17190 (H2N74_17190) flgM 3521188..3521454 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H2N74_RS17195 (H2N74_17195) - 3521524..3521943 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  H2N74_RS17200 (H2N74_17200) comFC 3522017..3522706 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  H2N74_RS17205 (H2N74_17205) - 3522712..3522996 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  H2N74_RS17210 (H2N74_17210) comFA 3523054..3524439 (-) 1386 WP_095060187.1 DEAD/DEAH box helicase Machinery gene
  H2N74_RS17215 (H2N74_17215) - 3524547..3525395 (-) 849 WP_003151387.1 DegV family protein -
  H2N74_RS17220 (H2N74_17220) degU 3525493..3526182 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H2N74_RS17225 (H2N74_17225) degS 3526259..3527422 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  H2N74_RS17230 (H2N74_17230) - 3527645..3528292 (+) 648 WP_007407485.1 YigZ family protein -
  H2N74_RS17235 (H2N74_17235) - 3528297..3529511 (+) 1215 WP_014419013.1 LCP family protein -
  H2N74_RS17240 (H2N74_17240) - 3529601..3530677 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=470164 H2N74_RS17220 WP_003219701.1 3525493..3526182(-) (degU) [Bacillus velezensis strain JSRB 166]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=470164 H2N74_RS17220 WP_003219701.1 3525493..3526182(-) (degU) [Bacillus velezensis strain JSRB 166]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1