Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HMPREF0462_RS07115 Genome accession   NC_017375
Coordinates   1452647..1453222 (-) Length   191 a.a.
NCBI ID   WP_001203541.1    Uniprot ID   F4D3V2
Organism   Helicobacter pylori 83     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447647..1458222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS08815 - 1448490..1448573 (-) 84 Protein_1375 type II restriction endonuclease -
  HMPREF0462_RS07095 (HMPREF0462_1452) - 1448717..1448956 (+) 240 WP_000777864.1 helix-turn-helix domain-containing protein -
  HMPREF0462_RS07100 (HMPREF0462_1453) - 1448953..1449960 (+) 1008 WP_001210999.1 DNA adenine methylase -
  HMPREF0462_RS07105 (HMPREF0462_1454) - 1449964..1451103 (+) 1140 WP_001049134.1 DNA methyltransferase -
  HMPREF0462_RS07110 (HMPREF0462_1455) - 1451447..1452625 (+) 1179 WP_014536610.1 hypothetical protein -
  HMPREF0462_RS07115 (HMPREF0462_1456) comFC 1452647..1453222 (-) 576 WP_001203541.1 ComF family protein Machinery gene
  HMPREF0462_RS07120 (HMPREF0462_1457) tmk 1453210..1453785 (-) 576 WP_000289751.1 dTMP kinase -
  HMPREF0462_RS07125 (HMPREF0462_1458) coaD 1453787..1454260 (-) 474 WP_001169235.1 pantetheine-phosphate adenylyltransferase -
  HMPREF0462_RS07130 (HMPREF0462_1459) - 1454260..1454823 (-) 564 WP_000780095.1 UbiX family flavin prenyltransferase -
  HMPREF0462_RS07135 (HMPREF0462_1460) flgA 1454833..1455489 (-) 657 WP_000697690.1 flagellar basal body P-ring formation chaperone FlgA -
  HMPREF0462_RS07140 (HMPREF0462_1461) uvrD 1455486..1457531 (-) 2046 WP_000345184.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21336.97 Da        Isoelectric Point: 9.0902

>NTDB_id=47013 HMPREF0462_RS07115 WP_001203541.1 1452647..1453222(-) (comFC) [Helicobacter pylori 83]
MRCLTCLELSFKPLCPNCLNDLPLSLKVKVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=47013 HMPREF0462_RS07115 WP_001203541.1 1452647..1453222(-) (comFC) [Helicobacter pylori 83]
ATGCGTTGTTTAACTTGTTTGGAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAAGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4D3V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment