Detailed information NTG0047009

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HMPREF0462_RS06680
• Genome accession: NC_017375
• Coordinates: 1363865..1364833 (-)
• Length: 322 a.a.
• NCBI ID: WP_014536593.1
• Uniprot ID: F4D3C9
• Organism: Helicobacter pylori 83
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1358865..1369833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0462_RS06660 (HMPREF0462_1359)	-	1359169..1360101 (-)	933	WP_001002457.1	GDP-L-fucose synthase family protein	-
HMPREF0462_RS06665 (HMPREF0462_1360)	gmd	1360094..1361239 (-)	1146	WP_014533533.1	GDP-mannose 4,6-dehydratase	-
HMPREF0462_RS06670 (HMPREF0462_1361)	-	1361253..1362665 (-)	1413	WP_000694851.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HMPREF0462_RS06675 (HMPREF0462_1362)	comB10	1362736..1363872 (-)	1137	WP_001045738.1	DNA type IV secretion system protein ComB10	Machinery gene
HMPREF0462_RS06680 (HMPREF0462_1363)	comB9	1363865..1364833 (-)	969	WP_014536593.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HMPREF0462_RS06685 (HMPREF0462_1364)	comB8	1364833..1365576 (-)	744	WP_000660541.1	type IV secretion system protein	Machinery gene
HMPREF0462_RS06690	comB7	1365573..1365698 (-)	126	WP_000688336.1	hypothetical protein	Machinery gene
HMPREF0462_RS06695 (HMPREF0462_1365)	comB6	1365714..1366769 (-)	1056	WP_000786668.1	P-type conjugative transfer protein TrbL	Machinery gene
HMPREF0462_RS06700 (HMPREF0462_1366)	-	1366777..1367772 (-)	996	WP_000468430.1	PDZ domain-containing protein	-
HMPREF0462_RS06705 (HMPREF0462_1367)	-	1367772..1368065 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HMPREF0462_RS06710 (HMPREF0462_1368)	panD	1368076..1368426 (-)	351	WP_000142274.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 322 a.a.
• Molecular weight: 37102.82 Da
• Isoelectric Point: 9.3713

>NTDB_id=47009 HMPREF0462_RS06680 WP_014536593.1 1363865..1364833(-) (comB9) [Helicobacter pylori 83]
MRKVLCTLVGFLLLSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKLQNKENTFEKALTNNKPLKEEKEEIKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKK
SKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGK
DE

Nucleotide

• Length: 969 bp

>NTDB_id=47009 HMPREF0462_RS06680 WP_014536593.1 1363865..1364833(-) (comB9) [Helicobacter pylori 83]
ATGCGTAAGGTTTTATGCACTCTTGTGGGATTTTTGTTGCTTTCTAGTGCTTTAAAAGCCGATGATTTTTTGGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCTACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCTTTAAA
AGAAGAAAAAGAAGAAATCAAAGAAAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTA
AAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAA
TCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCT
CTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTA
TCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGCTTTATCAAAAAGGGTAAA
GATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-313)

3D structure

• AlphaFold DB: F4D3C9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.945	100	0.941