Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H2R00_RS14490 Genome accession   NZ_CP059494
Coordinates   2930239..2931618 (-) Length   459 a.a.
NCBI ID   WP_154999861.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2925239..2936618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS14470 ispF 2926759..2927235 (-) 477 WP_152849939.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  H2R00_RS14475 ispD 2927228..2927923 (-) 696 WP_182069554.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  H2R00_RS14480 - 2927940..2929028 (-) 1089 WP_154999859.1 PIN/TRAM domain-containing protein -
  H2R00_RS14485 disA 2929159..2930235 (-) 1077 WP_182069556.1 DNA integrity scanning diadenylate cyclase DisA -
  H2R00_RS14490 radA 2930239..2931618 (-) 1380 WP_154999861.1 DNA repair protein RadA Machinery gene
  H2R00_RS14495 clpC 2931698..2934130 (-) 2433 WP_075752568.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  H2R00_RS14500 - 2934127..2935218 (-) 1092 WP_003178273.1 protein arginine kinase -
  H2R00_RS14505 - 2935218..2935772 (-) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  H2R00_RS14510 - 2935787..2936251 (-) 465 WP_003178269.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49839.27 Da        Isoelectric Point: 7.4035

>NTDB_id=470074 H2R00_RS14490 WP_154999861.1 2930239..2931618(-) (radA) [Bacillus haynesii strain P19]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPQPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=470074 H2R00_RS14490 WP_154999861.1 2930239..2931618(-) (radA) [Bacillus haynesii strain P19]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATCTGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACCGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGAAAATCAACTTT
GCTGCTTCAAGTATCTGCTCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTCCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACTGTTTACCAAAGTGATATCACATCCGC
TCCGGGCAGCGTGTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTTCTTTACTTT
GAAGGTGAGCGCCATCATACATTTCGGATTTTAAGAGCAGTCAAAAACAGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAGGTGTTGAATCCGTCGGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCAGCCG
GATCGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGACCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAAAAAAGGGTTGG
GTTGCTCCTGCAAAATCAAGACGCCTATTTGAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATTGATCTCGCCG
TTGCGGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCAACCGACGGATTGTTTTATCGGAGAAGTCGGCTTGACA
GGGGAGGTCCGCAGAGTATCAAGGATAGAACAGAGAGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.048

99.782

0.908
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61