Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H2R00_RS06465 Genome accession   NZ_CP059494
Coordinates   1317260..1318162 (-) Length   300 a.a.
NCBI ID   WP_154999503.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1312260..1323162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS06450 xerC 1312619..1313533 (-) 915 WP_182071033.1 tyrosine recombinase XerC -
  H2R00_RS06455 trmFO 1313600..1314904 (-) 1305 WP_182070691.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H2R00_RS06460 topA 1314980..1317055 (-) 2076 WP_154999502.1 type I DNA topoisomerase -
  H2R00_RS06465 dprA 1317260..1318162 (-) 903 WP_154999503.1 DNA-processing protein DprA Machinery gene
  H2R00_RS06470 sucD 1318275..1319177 (-) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  H2R00_RS06475 sucC 1319196..1320356 (-) 1161 WP_154999504.1 ADP-forming succinate--CoA ligase subunit beta -
  H2R00_RS06480 - 1320532..1320816 (-) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  H2R00_RS06485 - 1320813..1322507 (-) 1695 WP_154999508.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33221.42 Da        Isoelectric Point: 10.0650

>NTDB_id=470049 H2R00_RS06465 WP_154999503.1 1317260..1318162(-) (dprA) [Bacillus haynesii strain P19]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEADGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNEKLLHEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTVVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPDIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSHAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=470049 H2R00_RS06465 WP_154999503.1 1317260..1318162(-) (dprA) [Bacillus haynesii strain P19]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAACTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAACGTTAAACGGCTTATCCGTTCTTACGAGGCGGACGGTGTCCGCATG
ACCGCCATATCTTCCCCCGACTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CGAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TCCATCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGGTCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCATCCTCCTGACATTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAAAGCGGATCGCTC
ATCACCGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCGAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTTCCGCCTTCACACG
CTCAATATACGGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

38.065

100

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

39.781

91.333

0.363