Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H2R00_RS02460 Genome accession   NZ_CP059494
Coordinates   466558..468288 (+) Length   576 a.a.
NCBI ID   WP_182070399.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461558..473288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS02435 - 461795..462055 (+) 261 WP_020452133.1 exodeoxyribonuclease VII small subunit -
  H2R00_RS02440 - 462045..462935 (+) 891 WP_154997692.1 polyprenyl synthetase family protein -
  H2R00_RS02445 dxs 463169..465070 (+) 1902 WP_182070398.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H2R00_RS02450 - 465067..465912 (+) 846 WP_154994148.1 TlyA family RNA methyltransferase -
  H2R00_RS02455 argR 466077..466526 (+) 450 WP_003183369.1 transcriptional regulator ArgR -
  H2R00_RS02460 recN 466558..468288 (+) 1731 WP_182070399.1 DNA repair protein RecN Machinery gene
  H2R00_RS02465 spoIVB 468436..469752 (+) 1317 WP_043927930.1 SpoIVB peptidase -
  H2R00_RS02470 spo0A 470042..470842 (+) 801 WP_154994145.1 sporulation transcription factor Spo0A Regulator
  H2R00_RS02475 - 471135..471704 (+) 570 WP_182071007.1 serine acetyltransferase -
  H2R00_RS02480 - 472087..472548 (+) 462 WP_244958274.1 membrane bound lipoprotein -
  H2R00_RS02485 - 472596..473204 (+) 609 WP_234113235.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64566.40 Da        Isoelectric Point: 4.8371

>NTDB_id=470040 H2R00_RS02460 WP_182070399.1 466558..468288(+) (recN) [Bacillus haynesii strain P19]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDNVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKITEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=470040 H2R00_RS02460 WP_182070399.1 466558..468288(+) (recN) [Bacillus haynesii strain P19]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCCTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGGGCCGGAAAATCGATCATCATCGACGCCGTTTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAGGCCTCAGATGATATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGACAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTTGCGGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGATGAACTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATATGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAACGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAATGCGTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAGCTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATATGGTGCTACTGTC
GAAGATATCCAAGCCTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCATTTGCAGGCTTT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCGGTTCAGCTCACAAAGCACGGCATTGACAACGT
CCGTTTCCTGATCTCTACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAAGTTGCTTCGGGAGGAGAGCTGTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTCACATCGATCATTTTCGATGAAGTGGACACAGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCGATCGGCTCCCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATCACGGAAATCGGCCGGATGATCGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTGAATCAAGCTAAGCTCGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813