Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HMPREF0462_RS01915 Genome accession   NC_017375
Coordinates   379552..379956 (+) Length   134 a.a.
NCBI ID   WP_000599231.1    Uniprot ID   A0A1Q4N777
Organism   Helicobacter pylori 83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 374552..384956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS01880 (HMPREF0462_0386) - 374730..375668 (-) 939 WP_000833951.1 tetraacyldisaccharide 4'-kinase -
  HMPREF0462_RS01885 (HMPREF0462_0387) - 375665..376447 (-) 783 WP_001168210.1 NAD+ synthase -
  HMPREF0462_RS01895 (HMPREF0462_0388) ilvC 376696..377688 (+) 993 WP_001207774.1 ketol-acid reductoisomerase -
  HMPREF0462_RS01900 (HMPREF0462_0389) minD 377707..378513 (+) 807 WP_001019097.1 septum site-determining protein MinD -
  HMPREF0462_RS01905 (HMPREF0462_0390) minE 378510..378743 (+) 234 WP_000051409.1 cell division topological specificity factor MinE -
  HMPREF0462_RS01910 (HMPREF0462_0391) dprA 378755..379555 (+) 801 WP_000841137.1 DNA-processing protein DprA Machinery gene
  HMPREF0462_RS01915 (HMPREF0462_0392) dprB 379552..379956 (+) 405 WP_000599231.1 Holliday junction resolvase RuvX Machinery gene
  HMPREF0462_RS01920 (HMPREF0462_0393) - 380087..380560 (+) 474 WP_014536432.1 tetratricopeptide repeat protein -
  HMPREF0462_RS01925 (HMPREF0462_0394) - 380748..381086 (+) 339 WP_000699916.1 hypothetical protein -
  HMPREF0462_RS01930 (HMPREF0462_0395) - 381070..381630 (+) 561 WP_000037141.1 hypothetical protein -
  HMPREF0462_RS08545 (HMPREF0462_0396) - 381641..382141 (+) 501 WP_014536433.1 glycoside hydrolase family protein -
  HMPREF0462_RS08680 (HMPREF0462_0397) - 382161..382322 (+) 162 WP_014536434.1 lysozyme -
  HMPREF0462_RS08550 (HMPREF0462_0398) - 382380..382574 (+) 195 WP_001267764.1 hypothetical protein -
  HMPREF0462_RS01945 (HMPREF0462_0399) - 382652..383038 (+) 387 WP_000397547.1 DUF1294 domain-containing protein -
  HMPREF0462_RS01950 - 383038..383823 (+) 786 WP_000488077.1 hypothetical protein -
  HMPREF0462_RS01955 (HMPREF0462_0401) - 383813..384937 (+) 1125 WP_000426618.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15250.73 Da        Isoelectric Point: 9.1283

>NTDB_id=47003 HMPREF0462_RS01915 WP_000599231.1 379552..379956(+) (dprB) [Helicobacter pylori 83]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=47003 HMPREF0462_RS01915 WP_000599231.1 379552..379956(+) (dprB) [Helicobacter pylori 83]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAATGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q4N777

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment