Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H1D55_RS18820 Genome accession   NZ_CP059474
Coordinates   2920213..2921073 (-) Length   286 a.a.
NCBI ID   WP_001152283.1    Uniprot ID   A0A009QK25
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2915213..2926073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS13635 - 2916104..2917414 (+) 1311 WP_000753285.1 tetratricopeptide repeat protein -
  H1D55_RS13640 - 2917491..2917817 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  H1D55_RS13645 rlmB 2917919..2918668 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H1D55_RS13650 - 2918704..2919618 (+) 915 WP_000075011.1 DMT family transporter -
  H1D55_RS13655 coaE 2919615..2920211 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  H1D55_RS18820 pilD 2920213..2921073 (-) 861 WP_001152283.1 prepilin peptidase Machinery gene
  H1D55_RS13670 pilC 2921073..2922299 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  H1D55_RS13675 pilB 2922329..2924041 (-) 1713 WP_001274985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H1D55_RS13680 tpiA 2924332..2925126 (+) 795 WP_000016932.1 triose-phosphate isomerase -
  H1D55_RS13685 secG 2925139..2925468 (+) 330 WP_000555569.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32144.59 Da        Isoelectric Point: 7.1041

>NTDB_id=469953 H1D55_RS18820 WP_001152283.1 2920213..2921073(-) (pilD) [Acinetobacter baumannii strain M175-3]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=469953 H1D55_RS18820 WP_001152283.1 2920213..2921073(-) (pilD) [Acinetobacter baumannii strain M175-3]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QK25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441