Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HMPREF0462_RS00095 | Genome accession | NC_017375 |
| Coordinates | 13967..14230 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori 83 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 8967..19230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF0462_RS00070 (HMPREF0462_0012) | groES | 9266..9622 (-) | 357 | WP_000671964.1 | co-chaperone GroES | - |
| HMPREF0462_RS00075 (HMPREF0462_0013) | dnaG | 9897..11576 (+) | 1680 | WP_000601571.1 | DNA primase | - |
| HMPREF0462_RS00080 (HMPREF0462_0014) | - | 11573..12625 (+) | 1053 | WP_000721161.1 | MnmA/TRMU family protein | - |
| HMPREF0462_RS00085 (HMPREF0462_0015) | - | 12714..13541 (+) | 828 | WP_001154885.1 | DUF5718 family protein | - |
| HMPREF0462_RS00090 (HMPREF0462_0016) | comB2 | 13686..13967 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HMPREF0462_RS00095 (HMPREF0462_0017) | comB3 | 13967..14230 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HMPREF0462_RS00100 (HMPREF0462_0018) | comB4 | 14232..16595 (+) | 2364 | WP_000888902.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HMPREF0462_RS00105 (HMPREF0462_0019) | - | 16897..18237 (+) | 1341 | WP_041201448.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=46993 HMPREF0462_RS00095 WP_000584955.1 13967..14230(+) (comB3) [Helicobacter pylori 83]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46993 HMPREF0462_RS00095 WP_000584955.1 13967..14230(+) (comB3) [Helicobacter pylori 83]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |