Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HMPREF0462_RS00090 Genome accession   NC_017375
Coordinates   13686..13967 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori 83     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8686..18967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0462_RS00070 (HMPREF0462_0012) groES 9266..9622 (-) 357 WP_000671964.1 co-chaperone GroES -
  HMPREF0462_RS00075 (HMPREF0462_0013) dnaG 9897..11576 (+) 1680 WP_000601571.1 DNA primase -
  HMPREF0462_RS00080 (HMPREF0462_0014) - 11573..12625 (+) 1053 WP_000721161.1 MnmA/TRMU family protein -
  HMPREF0462_RS00085 (HMPREF0462_0015) - 12714..13541 (+) 828 WP_001154885.1 DUF5718 family protein -
  HMPREF0462_RS00090 (HMPREF0462_0016) comB2 13686..13967 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HMPREF0462_RS00095 (HMPREF0462_0017) comB3 13967..14230 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HMPREF0462_RS00100 (HMPREF0462_0018) comB4 14232..16595 (+) 2364 WP_000888902.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HMPREF0462_RS00105 (HMPREF0462_0019) - 16897..18237 (+) 1341 WP_041201448.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46992 HMPREF0462_RS00090 WP_001272686.1 13686..13967(+) (comB2) [Helicobacter pylori 83]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46992 HMPREF0462_RS00090 WP_001272686.1 13686..13967(+) (comB2) [Helicobacter pylori 83]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment