Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   H1D55_RS10455 Genome accession   NZ_CP059474
Coordinates   2238485..2238958 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233485..2243958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS10440 pilX 2236114..2236932 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H1D55_RS10445 pilW 2236929..2237930 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  H1D55_RS10450 pilV 2237931..2238491 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H1D55_RS10455 fimU 2238485..2238958 (-) 474 WP_001214059.1 pilus assembly FimT family protein Machinery gene
  H1D55_RS10460 ispH 2239128..2240078 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H1D55_RS10465 gmk 2240201..2240830 (+) 630 WP_000015937.1 guanylate kinase -
  H1D55_RS10470 rpoZ 2240903..2241181 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H1D55_RS10475 - 2241220..2241350 (+) 131 Protein_2052 hypothetical protein -
  H1D55_RS10480 - 2241390..2243495 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=469925 H1D55_RS10455 WP_001214059.1 2238485..2238958(-) (fimU) [Acinetobacter baumannii strain M175-3]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=469925 H1D55_RS10455 WP_001214059.1 2238485..2238958(-) (fimU) [Acinetobacter baumannii strain M175-3]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994