Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   H1D55_RS10445 Genome accession   NZ_CP059474
Coordinates   2236929..2237930 (-) Length   333 a.a.
NCBI ID   WP_000079195.1    Uniprot ID   D0CCR0
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2231929..2242930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS10435 pilY1 2232248..2236102 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  H1D55_RS10440 pilX 2236114..2236932 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H1D55_RS10445 pilW 2236929..2237930 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  H1D55_RS10450 pilV 2237931..2238491 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  H1D55_RS10455 fimU 2238485..2238958 (-) 474 WP_001214059.1 pilus assembly FimT family protein Machinery gene
  H1D55_RS10460 ispH 2239128..2240078 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H1D55_RS10465 gmk 2240201..2240830 (+) 630 WP_000015937.1 guanylate kinase -
  H1D55_RS10470 rpoZ 2240903..2241181 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H1D55_RS10475 - 2241220..2241350 (+) 131 Protein_2052 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35863.60 Da        Isoelectric Point: 6.1010

>NTDB_id=469923 H1D55_RS10445 WP_000079195.1 2236929..2237930(-) (pilW) [Acinetobacter baumannii strain M175-3]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQFFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=469923 H1D55_RS10445 WP_000079195.1 2236929..2237930(-) (pilW) [Acinetobacter baumannii strain M175-3]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCCAGCCGATTGCAAAAGGCCAATGCTGAAATTCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTAACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGTTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTTTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0CCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997