Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H1D55_RS10430 Genome accession   NZ_CP059474
Coordinates   2231753..2232235 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M175-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226753..2237235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS10395 - 2226862..2227893 (+) 1032 WP_001189454.1 lipase secretion chaperone -
  H1D55_RS10400 - 2228008..2228949 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H1D55_RS10405 rplS 2229002..2229370 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  H1D55_RS10410 trmD 2229579..2230319 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H1D55_RS10415 rimM 2230365..2230913 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  H1D55_RS10420 rpsP 2230933..2231184 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  H1D55_RS10425 pilE 2231331..2231756 (-) 426 WP_000788343.1 type IV pilin protein Machinery gene
  H1D55_RS10430 pilY2 2231753..2232235 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  H1D55_RS10435 pilY1 2232248..2236102 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  H1D55_RS10440 pilX 2236114..2236932 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=469920 H1D55_RS10430 WP_001046417.1 2231753..2232235(-) (pilY2) [Acinetobacter baumannii strain M175-3]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=469920 H1D55_RS10430 WP_001046417.1 2231753..2232235(-) (pilY2) [Acinetobacter baumannii strain M175-3]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444