Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H1D55_RS02480 Genome accession   NZ_CP059474
Coordinates   530667..531047 (+) Length   126 a.a.
NCBI ID   WP_042050087.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M175-3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525667..536047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS02450 kdsB 526570..527331 (+) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H1D55_RS02455 - 527343..528323 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H1D55_RS02460 - 528335..528676 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  H1D55_RS02465 - 528694..529467 (+) 774 WP_000497298.1 TatD family hydrolase -
  H1D55_RS02470 - 529505..530113 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H1D55_RS02475 - 530123..530677 (+) 555 WP_000841373.1 type II secretion system protein -
  H1D55_RS02480 xcpV 530667..531047 (+) 381 WP_042050087.1 type II secretion system minor pseudopilin GspI Machinery gene
  H1D55_RS02485 xcpW 531047..531748 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H1D55_RS02490 gspK 531748..532707 (+) 960 WP_000301461.1 type II secretion system minor pseudopilin GspK -
  H1D55_RS02495 - 532937..533533 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H1D55_RS02500 ung 533584..534297 (+) 714 WP_042050084.1 uracil-DNA glycosylase -
  H1D55_RS02505 - 534294..535418 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H1D55_RS02510 tadA 535425..535928 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=469909 H1D55_RS02480 WP_042050087.1 530667..531047(+) (xcpV) [Acinetobacter baumannii strain M175-3]
MKSKGFTLLEVIVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=469909 H1D55_RS02480 WP_042050087.1 530667..531047(+) (xcpV) [Acinetobacter baumannii strain M175-3]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATCGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992