Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HP2017_RS06910 Genome accession   NC_017374
Coordinates   1411029..1411604 (-) Length   191 a.a.
NCBI ID   WP_001203505.1    Uniprot ID   -
Organism   Helicobacter pylori 2017     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406029..1416604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2017_RS08660 - 1407703..1408949 (-) 1247 Protein_1337 restriction endonuclease subunit S -
  HP2017_RS06905 (hp2017_14062) - 1408946..1410996 (-) 2051 Protein_1338 N-6 DNA methylase -
  HP2017_RS06910 (hp2017_1407) comFC 1411029..1411604 (-) 576 WP_001203505.1 ComF family protein Machinery gene
  HP2017_RS06915 (hp2017_1408) tmk 1411592..1412167 (-) 576 WP_000289718.1 dTMP kinase -
  HP2017_RS06920 (hp2017_1409) coaD 1412169..1412642 (-) 474 WP_001169228.1 pantetheine-phosphate adenylyltransferase -
  HP2017_RS06925 (hp2017_1410) - 1412642..1413205 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HP2017_RS06930 (hp2017_1411) flgA 1413215..1413871 (-) 657 WP_000697684.1 flagellar basal body P-ring formation chaperone FlgA -
  HP2017_RS06935 (hp2017_1412) uvrD 1413868..1415913 (-) 2046 WP_000505296.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21404.02 Da        Isoelectric Point: 8.6744

>NTDB_id=46990 HP2017_RS06910 WP_001203505.1 1411029..1411604(-) (comFC) [Helicobacter pylori 2017]
MRCLICLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKG
LNIPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=46990 HP2017_RS06910 WP_001203505.1 1411029..1411604(-) (comFC) [Helicobacter pylori 2017]
ATGCGTTGTTTAATTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTACCCTTGCTTTCTCAAAAGGCCGGTGCGGAATTTGTAAGGATTTTACAAGAAAAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment