Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   pbN1_RS11760 Genome accession   NZ_CP059467
Coordinates   2489997..2491364 (+) Length   455 a.a.
NCBI ID   WP_169201666.1    Uniprot ID   -
Organism   Aromatoleum bremense strain PbN1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484997..2496364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pbN1_RS11735 (pbN1_23850) - 2485097..2485762 (-) 666 WP_169201669.1 class II aldolase/adducin family protein -
  pbN1_RS11740 (pbN1_23860) mtnA 2485759..2486847 (-) 1089 WP_211161377.1 S-methyl-5-thioribose-1-phosphate isomerase -
  pbN1_RS11745 (pbN1_23870) - 2486963..2488120 (+) 1158 WP_169201702.1 pyridoxal phosphate-dependent aminotransferase -
  pbN1_RS11750 (pbN1_23880) - 2488171..2488416 (+) 246 WP_169201668.1 PP0621 family protein -
  pbN1_RS11755 (pbN1_23890) - 2488432..2490000 (+) 1569 WP_169201667.1 PAS domain-containing sensor histidine kinase -
  pbN1_RS11760 (pbN1_23900) pilR 2489997..2491364 (+) 1368 WP_169201666.1 sigma-54 dependent transcriptional regulator Regulator
  pbN1_RS11765 (pbN1_23910) - 2491440..2492249 (+) 810 WP_169201665.1 DUF3014 domain-containing protein -
  pbN1_RS11770 (pbN1_23920) - 2492279..2492665 (-) 387 WP_169201664.1 type II toxin-antitoxin system VapC family toxin -
  pbN1_RS11775 (pbN1_23930) - 2492662..2492895 (-) 234 WP_169201663.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  pbN1_RS11780 (pbN1_23940) - 2493028..2493306 (+) 279 WP_244856926.1 DUF6516 family protein -
  pbN1_RS11785 (pbN1_23950) - 2493303..2493680 (+) 378 WP_169201661.1 hypothetical protein -
  pbN1_RS11790 (pbN1_23970) - 2494334..2494981 (-) 648 WP_169201660.1 methyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49999.15 Da        Isoelectric Point: 6.3957

>NTDB_id=469760 pbN1_RS11760 WP_169201666.1 2489997..2491364(+) (pilR) [Aromatoleum bremense strain PbN1]
MNYPERRQRPRTDVLVVDDEEDIREVLELSLMRMGLGCDTAGTIADARRLLGDRAYRLCLTDMRLPDGDGIELVAHIQAH
QPGLPVAVVTAYGSIETAIRALKAGAFDFVTKPVELKALRELVSHALRLDAPATAAPAASGRSLIGRSAALAHLRVQVEK
LARNQAPVFIHGESGTGKEVTACLIHELGPRVAGPFVPVNCGAISPELMESEFFGHRKGSFTGAVSDKDGLFQAARGGTL
FLDEVADLPLAMQVKLLRAIQERAVRPVGAHAEESVDVRILSASHRDLAQLVAAGKFRQDLYFRINVITLRVPPLRERPE
DIPELAAHILARLAEREGGAPRRLSADAAAELRQHAFPGNVRELENLLERACALCDGDEIGVEDVKLHATTGIGQPLRFD
FGDHPDDEHAGDGDDERLRVLRMLDETRWNRSEAARRLGMTLRKLRYQLQKWGME

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=469760 pbN1_RS11760 WP_169201666.1 2489997..2491364(+) (pilR) [Aromatoleum bremense strain PbN1]
ATGAACTACCCCGAACGACGCCAACGCCCCCGCACCGACGTCCTCGTCGTCGACGACGAGGAAGACATCCGCGAAGTGCT
CGAACTGTCGCTGATGCGCATGGGCCTCGGGTGCGACACCGCCGGCACGATCGCCGATGCGCGCCGGTTGCTCGGCGACC
GGGCTTATCGGCTGTGTCTCACCGACATGCGCCTGCCCGATGGCGACGGCATCGAGCTCGTCGCCCACATCCAGGCCCAC
CAGCCCGGCCTGCCGGTCGCCGTCGTGACCGCCTACGGCAGCATCGAAACTGCGATTCGCGCGCTCAAGGCCGGCGCTTT
CGACTTCGTCACCAAGCCCGTCGAGCTGAAGGCGCTGCGCGAACTCGTGAGTCATGCGCTCAGGCTCGACGCGCCGGCCA
CCGCCGCGCCGGCCGCGAGCGGCCGCAGTCTGATCGGGCGCTCGGCGGCGCTCGCGCATTTGCGCGTCCAGGTCGAAAAG
CTCGCCCGCAACCAGGCTCCGGTGTTCATCCACGGCGAATCCGGCACCGGCAAGGAAGTCACCGCGTGCCTGATCCACGA
GCTCGGCCCGCGCGTCGCCGGACCGTTCGTGCCGGTCAACTGCGGCGCGATCTCGCCGGAGCTGATGGAAAGCGAGTTCT
TCGGCCATCGCAAAGGCAGCTTCACCGGCGCGGTGTCGGACAAGGACGGCCTGTTCCAGGCGGCGCGCGGCGGTACGCTG
TTCCTCGACGAAGTCGCCGATCTGCCGCTGGCGATGCAGGTGAAGCTTTTGCGCGCGATCCAGGAGCGCGCGGTGCGCCC
GGTCGGCGCGCACGCCGAAGAGTCGGTCGATGTGCGCATCCTGTCGGCGTCGCATCGCGACCTCGCGCAGCTCGTCGCCG
CAGGCAAGTTCCGCCAGGATCTGTACTTCCGCATCAACGTCATCACGCTGCGCGTGCCGCCGCTGCGCGAACGCCCGGAA
GATATCCCGGAGCTTGCCGCGCACATCCTCGCCCGGCTCGCCGAGCGCGAAGGCGGCGCGCCCCGCCGTCTGAGCGCGGA
TGCGGCCGCCGAACTGCGCCAGCACGCTTTCCCCGGCAACGTGCGGGAGCTCGAAAATCTTCTCGAACGCGCCTGCGCGT
TGTGCGACGGCGACGAGATCGGCGTCGAGGACGTCAAGCTGCACGCGACGACAGGCATCGGTCAGCCGCTGCGCTTCGAC
TTTGGCGACCACCCCGATGACGAGCACGCCGGCGACGGCGACGACGAGCGCCTGCGCGTGCTGCGCATGCTCGACGAGAC
CCGCTGGAACCGCTCGGAGGCCGCACGCCGGCTCGGCATGACGCTGCGGAAGCTGCGTTACCAGCTGCAGAAATGGGGAA
TGGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-310)

Response regulator receiver domain (Response_reg)

(14-123)

Bacterial regulatory protein, Fis family (HTH_8)

(422-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.551

97.802

0.582
  pilR Acinetobacter baumannii strain A118

47.21

100

0.484