Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPIN_RS03735 Genome accession   NC_017372
Coordinates   796025..796288 (-) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori India7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 791025..801288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS03715 (HPIN_03865) - 791903..793072 (-) 1170 WP_000067671.1 type IV secretion system protein -
  HPIN_RS03720 (HPIN_03870) - 793065..793199 (-) 135 WP_000738747.1 hypothetical protein -
  HPIN_RS03725 (HPIN_03875) - 793196..795778 (-) 2583 WP_000462622.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPIN_RS03730 (HPIN_03880) - 795778..796014 (-) 237 WP_001183709.1 hypothetical protein -
  HPIN_RS03735 (HPIN_03885) comB3 796025..796288 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  HPIN_RS03740 (HPIN_03890) comB2 796299..796583 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPIN_RS03745 (HPIN_03895) - 796580..797059 (-) 480 WP_000571127.1 hypothetical protein -
  HPIN_RS03750 (HPIN_03900) - 797163..797951 (-) 789 WP_001140590.1 hypothetical protein -
  HPIN_RS03755 (HPIN_03905) - 797938..798834 (-) 897 Protein_738 DEAD/DEAH box helicase family protein -
  HPIN_RS03760 (HPIN_03910) - 798989..799549 (-) 561 WP_000388041.1 2-oxoacid:acceptor oxidoreductase family protein -
  HPIN_RS03765 (HPIN_03915) - 799549..800370 (-) 822 WP_000885320.1 2-oxoglutarate ferredoxin oxidoreductase subunit beta -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=46963 HPIN_RS03735 WP_001177712.1 796025..796288(-) (comB3) [Helicobacter pylori India7]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46963 HPIN_RS03735 WP_001177712.1 796025..796288(-) (comB3) [Helicobacter pylori India7]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTATATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment