Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JSU12_RS13935 Genome accession   NZ_CP069677
Coordinates   2897229..2897885 (-) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli O126:H45 strain MIN10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2892229..2902885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSU12_RS13905 (JSU12_13935) yecA 2893480..2894145 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  JSU12_RS13925 (JSU12_13955) pgsA 2894795..2895343 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JSU12_RS13930 (JSU12_13960) uvrC 2895400..2897232 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JSU12_RS13935 (JSU12_13965) letA 2897229..2897885 (-) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JSU12_RS13940 (JSU12_13970) yecU 2898181..2898357 (+) 177 WP_001307856.1 protein YecU -
  JSU12_RS13945 (JSU12_13975) yecF 2898344..2898568 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JSU12_RS13950 (JSU12_13980) sdiA 2898635..2899357 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  JSU12_RS13955 (JSU12_13985) tcyN 2899587..2900339 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JSU12_RS13960 (JSU12_13990) tcyL 2900336..2901004 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JSU12_RS13965 (JSU12_13995) dcyD 2901019..2902005 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=469616 JSU12_RS13935 WP_000611338.1 2897229..2897885(-) (letA) [Escherichia coli O126:H45 strain MIN10]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=469616 JSU12_RS13935 WP_000611338.1 2897229..2897885(-) (letA) [Escherichia coli O126:H45 strain MIN10]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491