Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPGAM_RS07465 | Genome accession | NC_017371 |
| Coordinates | 1561552..1562127 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203634.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1556552..1567127
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS07455 (HPGAM_07740) | - | 1558846..1559487 (-) | 642 | WP_000580099.1 | restriction endonuclease subunit S | - |
| HPGAM_RS07460 (HPGAM_07745) | - | 1559484..1561520 (-) | 2037 | WP_001045353.1 | N-6 DNA methylase | - |
| HPGAM_RS07465 (HPGAM_07750) | comFC | 1561552..1562127 (-) | 576 | WP_001203634.1 | ComF family protein | Machinery gene |
| HPGAM_RS07470 (HPGAM_07755) | tmk | 1562115..1562690 (-) | 576 | WP_000289044.1 | dTMP kinase | - |
| HPGAM_RS07475 (HPGAM_07760) | coaD | 1562692..1563165 (-) | 474 | WP_001169244.1 | pantetheine-phosphate adenylyltransferase | - |
| HPGAM_RS07480 (HPGAM_07765) | - | 1563165..1563728 (-) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| HPGAM_RS07485 (HPGAM_07775) | flgA | 1563738..1564394 (-) | 657 | WP_000699084.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPGAM_RS07490 (HPGAM_07780) | uvrD | 1564391..1566436 (-) | 2046 | WP_000505253.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21413.12 Da Isoelectric Point: 8.8914
>NTDB_id=46946 HPGAM_RS07465 WP_001203634.1 1561552..1562127(-) (comFC) [Helicobacter pylori Gambia94/24]
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGILRATNAVSYAGKSLEFRINNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKILNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGILRATNAVSYAGKSLEFRINNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKILNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46946 HPGAM_RS07465 WP_001203634.1 1561552..1562127(-) (comFC) [Helicobacter pylori Gambia94/24]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGAGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTAAGGATTTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGATTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATTAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATCAAAGTGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
GGTGAGAGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTAAGGATTTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTATGGGATTTTAAGGGCGACTAACGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGTATTAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATCAAAGTGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |