Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | HPGAM_RS01805 | Genome accession | NC_017371 |
| Coordinates | 363050..363454 (+) | Length | 134 a.a. |
| NCBI ID | WP_000599257.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Gambia94/24 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 358050..368454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPGAM_RS01770 (HPGAM_01825) | - | 358227..359165 (-) | 939 | WP_000833878.1 | tetraacyldisaccharide 4'-kinase | - |
| HPGAM_RS01775 (HPGAM_01830) | - | 359162..359944 (-) | 783 | WP_001168269.1 | NAD+ synthase | - |
| HPGAM_RS01785 (HPGAM_01835) | ilvC | 360193..361185 (+) | 993 | WP_001207732.1 | ketol-acid reductoisomerase | - |
| HPGAM_RS01790 (HPGAM_01840) | minD | 361210..362016 (+) | 807 | WP_001019057.1 | septum site-determining protein MinD | - |
| HPGAM_RS01795 (HPGAM_01845) | minE | 362013..362246 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| HPGAM_RS01800 (HPGAM_01850) | dprA | 362253..363053 (+) | 801 | WP_000835211.1 | DNA-processing protein DprA | Machinery gene |
| HPGAM_RS01805 (HPGAM_01855) | dprB | 363050..363454 (+) | 405 | WP_000599257.1 | Holliday junction resolvase RuvX | Machinery gene |
| HPGAM_RS01810 (HPGAM_01860) | - | 363731..364306 (+) | 576 | WP_000168228.1 | tetratricopeptide repeat protein | - |
| HPGAM_RS01815 (HPGAM_01865) | - | 364493..364831 (+) | 339 | WP_000699898.1 | hypothetical protein | - |
| HPGAM_RS01820 (HPGAM_01870) | - | 364815..365375 (+) | 561 | WP_001035877.1 | hypothetical protein | - |
| HPGAM_RS01825 (HPGAM_01875) | - | 365546..366427 (-) | 882 | WP_001117154.1 | RluA family pseudouridine synthase | - |
| HPGAM_RS01830 (HPGAM_01880) | recJ | 366427..367977 (-) | 1551 | WP_000810772.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15140.62 Da Isoelectric Point: 9.4703
>NTDB_id=46936 HPGAM_RS01805 WP_000599257.1 363050..363454(+) (dprB) [Helicobacter pylori Gambia94/24]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLGYLGKKNKKLATKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLRKKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLGYLGKKNKKLATKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=46936 HPGAM_RS01805 WP_000599257.1 363050..363454(+) (dprB) [Helicobacter pylori Gambia94/24]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAAAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAACCCAACGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAACAAGAAGCT
CGCCACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAAAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAACCCAACGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAACAAGAAGCT
CGCCACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
91.791 |
100 |
0.918 |