NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	H0S62_RS19890	Genome accession	NZ_CP059386
Coordinates	1677037..1677897 (-)	Length	286 a.a.
NCBI ID	WP_002061654.1	Uniprot ID	N9KL48
Organism	Acinetobacter baumannii strain 36-1512
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1672037..1682897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0S62_RS08205 (H0S62_08205)	-	1672928..1674238 (+)	1311	WP_004842687.1	tetratricopeptide repeat protein	-
H0S62_RS08210 (H0S62_08210)	-	1674315..1674641 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H0S62_RS08215 (H0S62_08215)	rlmB	1674743..1675492 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H0S62_RS08220 (H0S62_08220)	-	1675528..1676442 (+)	915	WP_000075011.1	DMT family transporter	-
H0S62_RS08225 (H0S62_08225)	coaE	1676439..1677035 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
H0S62_RS19890 (H0S62_08230)	pilD	1677037..1677897 (-)	861	WP_002061654.1	prepilin peptidase	Machinery gene
H0S62_RS08235 (H0S62_08235)	pilC	1677897..1679123 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H0S62_RS08240 (H0S62_08240)	pilB	1679153..1680865 (-)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H0S62_RS08245 (H0S62_08245)	tpiA	1681156..1681950 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
H0S62_RS08250 (H0S62_08250)	secG	1681963..1682292 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32083.45 Da Isoelectric Point: 7.1041

                                >NTDB_id=469273 H0S62_RS19890 WP_002061654.1 1677037..1677897(-) (pilD) [Acinetobacter baumannii strain 36-1512]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=469273 H0S62_RS19890 WP_002061654.1 1677037..1677897(-) (pilD) [Acinetobacter baumannii strain 36-1512]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	N9KL48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0469273