Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0S62_RS15245 Genome accession   NZ_CP059386
Coordinates   3064468..3064848 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 36-1512     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3059468..3069848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S62_RS15215 (H0S62_15210) kdsB 3060371..3061132 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0S62_RS15220 (H0S62_15215) - 3061144..3062124 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  H0S62_RS15225 (H0S62_15220) - 3062136..3062477 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  H0S62_RS15230 (H0S62_15225) - 3062495..3063268 (+) 774 WP_000497302.1 TatD family hydrolase -
  H0S62_RS15235 (H0S62_15230) - 3063306..3063914 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0S62_RS15240 (H0S62_15235) - 3063924..3064478 (+) 555 WP_002057406.1 type II secretion system protein -
  H0S62_RS15245 (H0S62_15240) xcpV 3064468..3064848 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0S62_RS15250 (H0S62_15245) xcpW 3064848..3065549 (+) 702 WP_000594581.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0S62_RS15255 (H0S62_15250) gspK 3065549..3066508 (+) 960 WP_005139244.1 type II secretion system minor pseudopilin GspK -
  H0S62_RS15260 (H0S62_15255) - 3066738..3067334 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H0S62_RS15265 (H0S62_15260) ung 3067385..3068098 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  H0S62_RS15270 (H0S62_15265) - 3068095..3069219 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H0S62_RS15275 (H0S62_15270) tadA 3069226..3069729 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=469270 H0S62_RS15245 WP_000836911.1 3064468..3064848(+) (xcpV) [Acinetobacter baumannii strain 36-1512]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=469270 H0S62_RS15245 WP_000836911.1 3064468..3064848(+) (xcpV) [Acinetobacter baumannii strain 36-1512]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1