Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPF16_RS01760 Genome accession   NC_017368
Coordinates   345343..345747 (+) Length   134 a.a.
NCBI ID   WP_000599228.1    Uniprot ID   -
Organism   Helicobacter pylori F16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340343..350747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF16_RS01725 (HPF16_0336) - 340516..341454 (-) 939 WP_000833900.1 tetraacyldisaccharide 4'-kinase -
  HPF16_RS01730 (HPF16_0337) - 341451..342233 (-) 783 WP_001168259.1 NAD+ synthase -
  HPF16_RS01740 (HPF16_0338) ilvC 342482..343474 (+) 993 WP_001207563.1 ketol-acid reductoisomerase -
  HPF16_RS01745 (HPF16_0339) minD 343498..344304 (+) 807 WP_001019102.1 septum site-determining protein MinD -
  HPF16_RS01750 (HPF16_0340) minE 344301..344534 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPF16_RS01755 (HPF16_0341) dprA 344546..345346 (+) 801 WP_000841128.1 DNA-processing protein DprA Machinery gene
  HPF16_RS01760 (HPF16_0342) dprB 345343..345747 (+) 405 WP_000599228.1 Holliday junction resolvase RuvX Machinery gene
  HPF16_RS01765 (HPF16_0343) - 345880..346350 (+) 471 WP_041200704.1 tetratricopeptide repeat protein -
  HPF16_RS01770 (HPF16_0344) - 346538..346876 (+) 339 WP_000699916.1 hypothetical protein -
  HPF16_RS01775 (HPF16_0345) - 346860..347420 (+) 561 WP_001034310.1 hypothetical protein -
  HPF16_RS08385 (HPF16_0346) - 347431..347613 (+) 183 WP_014535756.1 lysozyme -
  HPF16_RS08390 - 347706..347864 (+) 159 WP_231844776.1 lysozyme -
  HPF16_RS01785 (HPF16_0347) - 347930..348091 (+) 162 WP_180424435.1 lysozyme -
  HPF16_RS01790 - 348419..348805 (+) 387 Protein_340 DUF1294 domain-containing protein -
  HPF16_RS01795 (HPF16_0348) - 348805..349590 (+) 786 WP_000119825.1 hypothetical protein -
  HPF16_RS01800 (HPF16_0349) - 349580..350683 (+) 1104 WP_000426619.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15290.80 Da        Isoelectric Point: 9.1637

>NTDB_id=46913 HPF16_RS01760 WP_000599228.1 345343..345747(+) (dprB) [Helicobacter pylori F16]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNAHIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46913 HPF16_RS01760 WP_000599228.1 345343..345747(+) (dprB) [Helicobacter pylori F16]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCACATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948

Multiple sequence alignment