Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPF16_RS00090 Genome accession   NC_017368
Coordinates   13521..13802 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori F16     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8521..18802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF16_RS00070 (HPF16_0009) groES 9099..9455 (-) 357 WP_000671953.1 co-chaperone GroES -
  HPF16_RS00075 (HPF16_0010) dnaG 9730..11409 (+) 1680 WP_000601551.1 DNA primase -
  HPF16_RS00080 (HPF16_0011) - 11406..12458 (+) 1053 WP_000721196.1 MnmA/TRMU family protein -
  HPF16_RS00085 (HPF16_0012) - 12549..13376 (+) 828 WP_001154871.1 DUF5718 family protein -
  HPF16_RS00090 (HPF16_0013) comB2 13521..13802 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPF16_RS00095 (HPF16_0014) comB3 13802..14065 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPF16_RS00100 (HPF16_0015) comB4 14068..16431 (+) 2364 WP_000890539.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPF16_RS00105 (HPF16_0016) - 16752..18092 (+) 1341 WP_014535702.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46906 HPF16_RS00090 WP_001272686.1 13521..13802(+) (comB2) [Helicobacter pylori F16]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46906 HPF16_RS00090 WP_001272686.1 13521..13802(+) (comB2) [Helicobacter pylori F16]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCTTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment