Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPF57_RS07150 | Genome accession | NC_017367 |
| Coordinates | 1468022..1468597 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203571.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F57 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1463022..1473597
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF57_RS07140 (HPF57_1386) | - | 1464775..1465953 (-) | 1179 | WP_000579727.1 | restriction endonuclease subunit S | - |
| HPF57_RS07145 (HPF57_1387) | - | 1465950..1467989 (-) | 2040 | WP_001147694.1 | class I SAM-dependent DNA methyltransferase | - |
| HPF57_RS07150 (HPF57_1388) | comFC | 1468022..1468597 (-) | 576 | WP_001203571.1 | ComF family protein | Machinery gene |
| HPF57_RS07155 (HPF57_1389) | tmk | 1468585..1469160 (-) | 576 | WP_000289753.1 | dTMP kinase | - |
| HPF57_RS07160 (HPF57_1390) | coaD | 1469162..1469635 (-) | 474 | WP_014535680.1 | pantetheine-phosphate adenylyltransferase | - |
| HPF57_RS07165 (HPF57_1391) | - | 1469635..1470198 (-) | 564 | WP_000780130.1 | UbiX family flavin prenyltransferase | - |
| HPF57_RS07170 (HPF57_1392) | flgA | 1470208..1470864 (-) | 657 | WP_000697672.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPF57_RS07175 (HPF57_1393) | uvrD | 1470861..1472906 (-) | 2046 | WP_000345166.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21305.91 Da Isoelectric Point: 8.8864
>NTDB_id=46904 HPF57_RS07150 WP_001203571.1 1468022..1468597(-) (comFC) [Helicobacter pylori F57]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFIFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRDFIFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46904 HPF57_RS07150 WP_001203571.1 1468022..1468597(-) (comFC) [Helicobacter pylori F57]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCATCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCATTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGGATTTCATCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |