Detailed information NTG0046899

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPF57_RS06700
• Genome accession: NC_017367
• Coordinates: 1375955..1377091 (-)
• Length: 378 a.a.
• NCBI ID: WP_001045735.1
• Uniprot ID: -
• Organism: Helicobacter pylori F57
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1370955..1382091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF57_RS06680 (HPF57_1300)	hypE	1371132..1372130 (+)	999	WP_000378821.1	hydrogenase expression/formation protein HypE	-
HPF57_RS06685 (HPF57_1301)	-	1372389..1373321 (-)	933	WP_001002431.1	GDP-L-fucose synthase family protein	-
HPF57_RS06690 (HPF57_1302)	gmd	1373314..1374459 (-)	1146	WP_014535670.1	GDP-mannose 4,6-dehydratase	-
HPF57_RS06695 (HPF57_1303)	-	1374473..1375885 (-)	1413	WP_000694853.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF57_RS06700 (HPF57_1304)	comB10	1375955..1377091 (-)	1137	WP_001045735.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF57_RS06705 (HPF57_1305)	comB9	1377084..1378046 (-)	963	WP_014535671.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF57_RS06710 (HPF57_1306)	comB8	1378046..1378789 (-)	744	WP_000660531.1	type IV secretion system protein	Machinery gene
HPF57_RS06715	comB7	1378786..1378911 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF57_RS06720 (HPF57_1307)	comB6	1378927..1379982 (-)	1056	WP_000786642.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF57_RS06725 (HPF57_1308)	-	1379990..1380985 (-)	996	WP_000468801.1	PDZ domain-containing protein	-
HPF57_RS06730 (HPF57_1309)	-	1380985..1381278 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HPF57_RS06735 (HPF57_1310)	panD	1381289..1381639 (-)	351	WP_000142267.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42048.57 Da
• Isoelectric Point: 9.8461

>NTDB_id=46899 HPF57_RS06700 WP_001045735.1 1375955..1377091(-) (comB10) [Helicobacter pylori F57]
MNKWIKGALVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSSPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=46899 HPF57_RS06700 WP_001045735.1 1375955..1377091(-) (comB10) [Helicobacter pylori F57]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTAGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955