Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPF57_RS06710 Genome accession   NC_017367
Coordinates   1378046..1378789 (-) Length   247 a.a.
NCBI ID   WP_000660531.1    Uniprot ID   -
Organism   Helicobacter pylori F57     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373046..1383789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS06690 (HPF57_1302) gmd 1373314..1374459 (-) 1146 WP_014535670.1 GDP-mannose 4,6-dehydratase -
  HPF57_RS06695 (HPF57_1303) - 1374473..1375885 (-) 1413 WP_000694853.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPF57_RS06700 (HPF57_1304) comB10 1375955..1377091 (-) 1137 WP_001045735.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPF57_RS06705 (HPF57_1305) comB9 1377084..1378046 (-) 963 WP_014535671.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPF57_RS06710 (HPF57_1306) comB8 1378046..1378789 (-) 744 WP_000660531.1 type IV secretion system protein Machinery gene
  HPF57_RS06715 comB7 1378786..1378911 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  HPF57_RS06720 (HPF57_1307) comB6 1378927..1379982 (-) 1056 WP_000786642.1 P-type conjugative transfer protein TrbL Machinery gene
  HPF57_RS06725 (HPF57_1308) - 1379990..1380985 (-) 996 WP_000468801.1 PDZ domain-containing protein -
  HPF57_RS06730 (HPF57_1309) - 1380985..1381278 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  HPF57_RS06735 (HPF57_1310) panD 1381289..1381639 (-) 351 WP_000142267.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28733.00 Da        Isoelectric Point: 9.2316

>NTDB_id=46901 HPF57_RS06710 WP_000660531.1 1378046..1378789(-) (comB8) [Helicobacter pylori F57]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEYLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=46901 HPF57_RS06710 WP_000660531.1 1378046..1378789(-) (comB8) [Helicobacter pylori F57]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAAAGGAACCGCTTGAAAATCGCCT
ACAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAATATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968

Multiple sequence alignment