Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPF57_RS01935 Genome accession   NC_017367
Coordinates   393261..393665 (+) Length   134 a.a.
NCBI ID   WP_000599232.1    Uniprot ID   -
Organism   Helicobacter pylori F57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 388261..398665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF57_RS01900 (HPF57_0381) - 388440..389378 (-) 939 WP_000833916.1 tetraacyldisaccharide 4'-kinase -
  HPF57_RS01905 (HPF57_0382) - 389375..390157 (-) 783 WP_001168201.1 NAD+ synthase -
  HPF57_RS01915 (HPF57_0383) ilvC 390405..391397 (+) 993 WP_001207819.1 ketol-acid reductoisomerase -
  HPF57_RS01920 (HPF57_0384) minD 391416..392222 (+) 807 WP_001029118.1 septum site-determining protein MinD -
  HPF57_RS01925 (HPF57_0385) minE 392219..392452 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPF57_RS01930 (HPF57_0386) dprA 392464..393264 (+) 801 WP_000841139.1 DNA-processing protein DprA Machinery gene
  HPF57_RS01935 (HPF57_0387) dprB 393261..393665 (+) 405 WP_000599232.1 Holliday junction resolvase RuvX Machinery gene
  HPF57_RS01940 (HPF57_0388) - 393798..394421 (+) 624 WP_000840161.1 tetratricopeptide repeat protein -
  HPF57_RS01945 (HPF57_0389) - 394552..394890 (+) 339 WP_000699911.1 hypothetical protein -
  HPF57_RS01950 (HPF57_0390) - 394874..395440 (+) 567 WP_000037136.1 hypothetical protein -
  HPF57_RS01955 (HPF57_0391) - 395452..395790 (+) 339 WP_014535561.1 glycoside hydrolase family protein -
  HPF57_RS08460 (HPF57_0392) - 395973..396134 (+) 162 WP_232500959.1 lysozyme -
  HPF57_RS01965 (HPF57_0393) - 396459..396845 (+) 387 WP_000397548.1 DUF1294 domain-containing protein -
  HPF57_RS01970 (HPF57_0395) - 396845..397630 (+) 786 Protein_383 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15253.84 Da        Isoelectric Point: 9.8304

>NTDB_id=46894 HPF57_RS01935 WP_000599232.1 393261..393665(+) (dprB) [Helicobacter pylori F57]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADMNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46894 HPF57_RS01935 WP_000599232.1 393261..393665(+) (dprB) [Helicobacter pylori F57]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
AATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACGTTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACATGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933

Multiple sequence alignment