Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPF32_RS07035 Genome accession   NC_017366
Coordinates   1436508..1437083 (-) Length   191 a.a.
NCBI ID   WP_001203609.1    Uniprot ID   -
Organism   Helicobacter pylori F32     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431508..1442083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS07025 (HPF32_1358) - 1433180..1434439 (-) 1260 WP_000580050.1 restriction endonuclease subunit S -
  HPF32_RS07030 (HPF32_1359) - 1434436..1436475 (-) 2040 WP_001147710.1 class I SAM-dependent DNA methyltransferase -
  HPF32_RS07035 (HPF32_1360) comFC 1436508..1437083 (-) 576 WP_001203609.1 ComF family protein Machinery gene
  HPF32_RS07040 (HPF32_1361) tmk 1437071..1437646 (-) 576 WP_000289730.1 dTMP kinase -
  HPF32_RS07045 (HPF32_1362) coaD 1437648..1438121 (-) 474 WP_001169259.1 pantetheine-phosphate adenylyltransferase -
  HPF32_RS07050 (HPF32_1363) - 1438121..1438684 (-) 564 WP_000780124.1 UbiX family flavin prenyltransferase -
  HPF32_RS07055 (HPF32_1364) flgA 1438694..1439350 (-) 657 WP_000697673.1 flagellar basal body P-ring formation chaperone FlgA -
  HPF32_RS07060 (HPF32_1365) uvrD 1439347..1441392 (-) 2046 WP_000345168.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21396.04 Da        Isoelectric Point: 9.0901

>NTDB_id=46884 HPF32_RS07035 WP_001203609.1 1436508..1437083(-) (comFC) [Helicobacter pylori F32]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYVLIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=46884 HPF32_RS07035 WP_001203609.1 1436508..1437083(-) (comFC) [Helicobacter pylori F32]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATATG
TGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCACTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

93.717

100

0.937
  ctsW Campylobacter jejuni subsp. jejuni 81-176

37.5

100

0.377

Multiple sequence alignment