Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPF32_RS04975 Genome accession   NC_017366
Coordinates   1043232..1043636 (-) Length   134 a.a.
NCBI ID   WP_000599205.1    Uniprot ID   -
Organism   Helicobacter pylori F32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038232..1048636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS04935 (HPF32_0964) - 1039249..1040034 (-) 786 WP_000488072.1 hypothetical protein -
  HPF32_RS07970 - 1040034..1040415 (-) 382 Protein_956 DUF1294 domain-containing protein -
  HPF32_RS04945 - 1040553..1040705 (-) 153 WP_232501016.1 hypothetical protein -
  HPF32_RS08485 (HPF32_0965) - 1040755..1041022 (-) 268 Protein_958 lysozyme -
  HPF32_RS04955 (HPF32_0967) - 1041455..1042015 (-) 561 WP_000037135.1 hypothetical protein -
  HPF32_RS04960 (HPF32_0968) - 1041999..1042337 (-) 339 WP_000699911.1 hypothetical protein -
  HPF32_RS08560 - 1042526..1042857 (-) 332 Protein_961 tetratricopeptide repeat protein -
  HPF32_RS08565 (HPF32_0969) - 1042824..1043174 (-) 351 WP_014535439.1 tetratricopeptide repeat protein -
  HPF32_RS04975 (HPF32_0970) dprB 1043232..1043636 (-) 405 WP_000599205.1 Holliday junction resolvase RuvX Machinery gene
  HPF32_RS04980 (HPF32_0971) dprA 1043633..1044433 (-) 801 WP_000841119.1 DNA-processing protein DprA Machinery gene
  HPF32_RS04985 (HPF32_0972) minE 1044445..1044678 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HPF32_RS04990 (HPF32_0973) minD 1044675..1045481 (-) 807 WP_001029114.1 septum site-determining protein MinD -
  HPF32_RS04995 (HPF32_0974) ilvC 1045500..1046492 (-) 993 WP_001207567.1 ketol-acid reductoisomerase -
  HPF32_RS05005 (HPF32_0975) - 1046743..1047525 (+) 783 WP_001168213.1 NAD+ synthase -
  HPF32_RS05010 (HPF32_0976) - 1047522..1048460 (+) 939 WP_000833958.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15215.80 Da        Isoelectric Point: 8.8525

>NTDB_id=46874 HPF32_RS04975 WP_000599205.1 1043232..1043636(-) (dprB) [Helicobacter pylori F32]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFIDEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46874 HPF32_RS04975 WP_000599205.1 1043232..1043636(-) (dprB) [Helicobacter pylori F32]
GTGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTGATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAATAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment