Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H1D01_RS07465 Genome accession   NZ_CP059329
Coordinates   1471561..1472709 (+) Length   382 a.a.
NCBI ID   WP_240024879.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0727     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1466561..1477709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D01_RS07440 (H1D01_07485) matP 1467047..1467496 (-) 450 WP_240024877.1 macrodomain Ter protein MatP -
  H1D01_RS07445 (H1D01_07490) - 1467589..1469226 (+) 1638 WP_240024878.1 AAA family ATPase -
  H1D01_RS07450 (H1D01_07495) fabA 1469339..1469869 (+) 531 WP_240017519.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  H1D01_RS07455 (H1D01_07500) rfaD 1469938..1470867 (-) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  H1D01_RS07460 (H1D01_07505) def 1470961..1471473 (-) 513 WP_006248765.1 peptide deformylase -
  H1D01_RS07465 (H1D01_07510) dprA 1471561..1472709 (+) 1149 WP_240024879.1 DNA-processing protein DprA Machinery gene
  H1D01_RS07470 (H1D01_07515) - 1472804..1474156 (-) 1353 WP_240024880.1 PTS ascorbate transporter subunit IIC -
  H1D01_RS07475 (H1D01_07520) - 1474169..1474438 (-) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  H1D01_RS07480 (H1D01_07525) - 1474669..1475694 (+) 1026 WP_240024881.1 LacI family DNA-binding transcriptional regulator -
  H1D01_RS07485 (H1D01_07530) secE 1475807..1476223 (+) 417 WP_240024882.1 preprotein translocase subunit SecE -
  H1D01_RS07490 (H1D01_07535) nusG 1476225..1476788 (+) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  H1D01_RS07495 (H1D01_07540) rplK 1477026..1477448 (+) 423 Protein_1469 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42488.58 Da        Isoelectric Point: 5.2272

>NTDB_id=468724 H1D01_RS07465 WP_240024879.1 1471561..1472709(+) (dprA) [Mannheimia haemolytica strain 0727]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHXKIVM
EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITAR
YALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKN
LPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=468724 H1D01_RS07465 WP_240024879.1 1471561..1472709(+) (dprA) [Mannheimia haemolytica strain 0727]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCANAAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGAACA
AATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTCGTA
ATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCTCGT
TATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAAGCT
AATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGCAAA
TCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAAAAT
CTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGCCAA
AGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGAGTG
GGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-375)

DNA recombination-mediator protein A (DNA_processg_A)

(73-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.351

99.215

0.728
  dprA Haemophilus influenzae Rd KW20

51.014

90.314

0.461
  dprA Vibrio campbellii strain DS40M4

44.744

97.12

0.435
  dprA Vibrio cholerae strain A1552

42.588

97.12

0.414
  dprA Legionella pneumophila strain ERS1305867

40.29

90.314

0.364